Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SPTA1P02549 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 RNA5SP211-201ENST00000365516 117 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.37□□□□□ -1.55
SPTA1P02549 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.37□□□□□ -1.55
SPTA1P02549 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.37□□□□□ -1.55
SPTA1P02549 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.37□□□□□ -1.55
SPTA1P02549 RPS4XP1-201ENST00000482189 787 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 PDCL3P4-201ENST00000489621 720 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 AC093824.1-201ENST00000508796 343 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.37□□□□□ -1.55
SPTA1P02549 AC110775.1-201ENST00000513721 462 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.37□□□□□ -1.55
SPTA1P02549 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.37□□□□□ -1.55
SPTA1P02549 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.37□□□□□ -1.55
SPTA1P02549 IGBP1P1-201ENST00000554337 1009 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.37□□□□□ -1.55
SPTA1P02549 AL109618.2-201ENST00000605527 211 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 AC010245.2-201ENST00000606908 1167 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC5.37□□□□□ -1.55
SPTA1P02549 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SPTA1P02549 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.37□□□□□ -1.55
SPTA1P02549 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.37□□□□□ -1.55
SPTA1P02549 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SPTA1P02549 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.37□□□□□ -1.55
SPTA1P02549 RN7SL269P-201ENST00000467795 305 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.37□□□□□ -1.55
SPTA1P02549 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.37□□□□□ -1.55
SPTA1P02549 AC010327.2-201ENST00000587647 488 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 BNIP3P33-201ENST00000598912 569 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SPTA1P02549 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 MAPK10-287ENST00000641217 3037 ntBASIC5.37□□□□□ -1.55
SPTA1P02549 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SPTA1P02549 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC5.37□□□□□ -1.55
SPTA1P02549 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.37□□□□□ -1.55
SPTA1P02549 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SPTA1P02549 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC5.37□□□□□ -1.55
SPTA1P02549 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SPTA1P02549 SNRPEP6-201ENST00000407465 277 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.36□□□□□ -1.55
SPTA1P02549 AC009237.1-201ENST00000442127 744 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC5.36□□□□□ -1.55
SPTA1P02549 AC091180.1-201ENST00000462104 372 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC5.36□□□□□ -1.55
SPTA1P02549 UGT2B25P-201ENST00000511504 1586 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.36□□□□□ -1.55
SPTA1P02549 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.36□□□□□ -1.55
SPTA1P02549 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.36□□□□□ -1.55
SPTA1P02549 AC091953.3-201ENST00000623220 236 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
SPTA1P02549 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.36□□□□□ -1.55
SPTA1P02549 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SPTA1P02549 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SPTA1P02549 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC5.36□□□□□ -1.55
SPTA1P02549 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC5.36□□□□□ -1.55
SPTA1P02549 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SPTA1P02549 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SPTA1P02549 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
SPTA1P02549 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SPTA1P02549 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.36□□□□□ -1.55
SPTA1P02549 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.36□□□□□ -1.55
SPTA1P02549 RNU1-106P-201ENST00000384382 164 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 AC009804.1-201ENST00000400949 179 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 GABARAPL3-201ENST00000412799 354 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 CUBNP2-201ENST00000443534 1139 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 DEFA11P-201ENST00000446470 261 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SPTA1P02549 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.36□□□□□ -1.55
SPTA1P02549 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SPTA1P02549 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SPTA1P02549 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
SPTA1P02549 AC007842.1-201ENST00000597336 2039 ntBASIC5.36□□□□□ -1.55
SPTA1P02549 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC5.36□□□□□ -1.55
SPTA1P02549 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
SPTA1P02549 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
SPTA1P02549 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC5.35□□□□□ -1.55
SPTA1P02549 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SPTA1P02549 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SPTA1P02549 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SPTA1P02549 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SPTA1P02549 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SPTA1P02549 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SPTA1P02549 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SPTA1P02549 RNA5SP87-201ENST00000384155 118 ntBASIC5.35□□□□□ -1.55
SPTA1P02549 OR2W4P-201ENST00000406496 926 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms