Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 RPL35AP25-201ENST00000584631 330 ntBASIC6.98□□□□□ -1.29
SSU72Q9NP77 ZNF559-205ENST00000586255 1016 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 AL356986.1-201ENST00000604085 341 ntBASIC6.98□□□□□ -1.29
SSU72Q9NP77 AL592494.3-201ENST00000609485 464 ntBASIC6.98□□□□□ -1.29
SSU72Q9NP77 AC024941.1-201ENST00000612250 334 ntBASIC6.98□□□□□ -1.29
SSU72Q9NP77 Z99129.1-201ENST00000612510 255 ntBASIC6.98□□□□□ -1.29
SSU72Q9NP77 HOTTIP_2.1-201ENST00000616633 376 ntBASIC6.98□□□□□ -1.29
SSU72Q9NP77 PFN1P2-202ENST00000621347 397 ntBASIC6.98□□□□□ -1.29
SSU72Q9NP77 AL356599.1-202ENST00000626919 218 ntTSL 5 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 AC068205.4-201ENST00000637880 804 ntBASIC6.98□□□□□ -1.29
SSU72Q9NP77 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SSU72Q9NP77 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
SSU72Q9NP77 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC132825.1-201ENST00000463573 2247 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 FGG-204ENST00000405164 1539 ntTSL 5 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC005618.1-201ENST00000606901 3148 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 CR848007.1-201ENST00000442354 1699 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 GCSAML-204ENST00000463359 1822 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 OR2M1P-201ENST00000318104 951 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 Y_RNA.248-201ENST00000364501 109 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 RNU6-31P-201ENST00000384388 108 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 U3.28-201ENST00000391249 210 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 FAF2P1-201ENST00000429974 1298 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 ETF1P3-201ENST00000430422 1160 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC092568.1-201ENST00000440950 1284 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC079781.1-201ENST00000441505 394 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 RPL5P32-201ENST00000454085 879 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AL096803.1-201ENST00000456921 1021 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 LINC02530-201ENST00000457945 894 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC022730.2-201ENST00000465359 452 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC011979.1-201ENST00000472300 483 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC026254.1-201ENST00000479473 431 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 ANK3-213ENST00000486349 493 ntTSL 2 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC006387.1-203ENST00000494849 342 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 HOXB-AS1-203ENST00000504972 680 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 HSPE1P23-201ENST00000509838 286 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC087752.2-201ENST00000521219 281 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 PRR13-203ENST00000546581 810 ntAPPRIS ALT2 TSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 RPSAP66-201ENST00000592196 606 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AL359704.2-201ENST00000604335 521 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC012409.3-201ENST00000611343 981 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 DLEU2_1.1-201ENST00000612089 120 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 DLEU2_1.2-201ENST00000614667 120 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 AC099654.10-201ENST00000640395 161 ntBASIC6.97□□□□□ -1.29
SSU72Q9NP77 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
SSU72Q9NP77 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SSU72Q9NP77 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms