Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC8.11□□□□□ -1.11
MSH6P52701 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
MSH6P52701 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC8.11□□□□□ -1.11
MSH6P52701 OR2W4P-201ENST00000406496 926 ntBASIC8.11□□□□□ -1.11
MSH6P52701 AC006466.1-201ENST00000438721 289 ntBASIC8.11□□□□□ -1.11
MSH6P52701 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC8.11□□□□□ -1.11
MSH6P52701 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC8.11□□□□□ -1.11
MSH6P52701 RPL7P45-201ENST00000455851 743 ntBASIC8.11□□□□□ -1.11
MSH6P52701 AP001922.4-201ENST00000526967 290 ntBASIC8.11□□□□□ -1.11
MSH6P52701 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC8.11□□□□□ -1.11
MSH6P52701 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC8.11□□□□□ -1.11
MSH6P52701 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC8.11□□□□□ -1.11
MSH6P52701 AC024255.1-201ENST00000614376 102 ntBASIC8.11□□□□□ -1.11
MSH6P52701 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC8.11□□□□□ -1.11
MSH6P52701 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 TEK-204ENST00000519097 3836 ntTSL 2 BASIC8.11□□□□□ -1.11
MSH6P52701 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 ZNF812P-201ENST00000457674 1694 ntBASIC8.11□□□□□ -1.11
MSH6P52701 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 OR52B5P-204ENST00000641744 3467 ntBASIC8.11□□□□□ -1.11
MSH6P52701 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
MSH6P52701 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC8.11□□□□□ -1.11
MSH6P52701 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSH6P52701 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
MSH6P52701 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
MSH6P52701 RNA5SP211-201ENST00000365516 117 ntBASIC8.1□□□□□ -1.11
MSH6P52701 RNU1-77P-201ENST00000390868 162 ntBASIC8.1□□□□□ -1.11
MSH6P52701 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 AL357752.1-201ENST00000412817 349 ntBASIC8.1□□□□□ -1.11
MSH6P52701 AL606490.8-201ENST00000441624 319 ntBASIC8.1□□□□□ -1.11
MSH6P52701 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC8.1□□□□□ -1.11
MSH6P52701 AL450023.1-201ENST00000450868 751 ntBASIC8.1□□□□□ -1.11
MSH6P52701 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC8.1□□□□□ -1.11
MSH6P52701 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 OR4A42P-201ENST00000531397 938 ntBASIC8.1□□□□□ -1.11
MSH6P52701 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC8.1□□□□□ -1.11
MSH6P52701 GARSP1-201ENST00000570895 719 ntBASIC8.1□□□□□ -1.11
MSH6P52701 MIR4697-201ENST00000582977 78 ntBASIC8.1□□□□□ -1.11
MSH6P52701 AL445528.2-201ENST00000620582 470 ntBASIC8.1□□□□□ -1.11
MSH6P52701 AC087516.1-201ENST00000561236 2428 ntBASIC8.1□□□□□ -1.11
MSH6P52701 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 GTF2IP4-201ENST00000453092 2054 ntBASIC8.1□□□□□ -1.11
MSH6P52701 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
MSH6P52701 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 AC105749.1-201ENST00000631338 2008 ntBASIC8.1□□□□□ -1.11
MSH6P52701 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 AC068733.2-201ENST00000605434 1418 ntBASIC8.1□□□□□ -1.11
MSH6P52701 NBPF8-201ENST00000583271 5330 ntBASIC8.1□□□□□ -1.11
MSH6P52701 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
MSH6P52701 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
MSH6P52701 U3.2-201ENST00000362981 210 ntBASIC8.1□□□□□ -1.11
MSH6P52701 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSH6P52701 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
MSH6P52701 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
MSH6P52701 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC8.1□□□□□ -1.11
MSH6P52701 RPS11P7-201ENST00000442125 465 ntBASIC8.1□□□□□ -1.11
MSH6P52701 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC8.1□□□□□ -1.11
MSH6P52701 RPS27AP3-201ENST00000453803 454 ntBASIC8.1□□□□□ -1.11
MSH6P52701 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC8.1□□□□□ -1.11
MSH6P52701 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC8.1□□□□□ -1.11
MSH6P52701 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC8.1□□□□□ -1.11
MSH6P52701 AL157831.2-201ENST00000564681 3095 ntBASIC8.09□□□□□ -1.11
MSH6P52701 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC8.09□□□□□ -1.11
MSH6P52701 AL591848.4-201ENST00000567832 3472 ntBASIC8.09□□□□□ -1.11
MSH6P52701 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
MSH6P52701 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
MSH6P52701 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
MSH6P52701 AC005034.3-201ENST00000604845 1747 ntBASIC8.09□□□□□ -1.11
MSH6P52701 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
MSH6P52701 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC8.09□□□□□ -1.12
MSH6P52701 RNA5SP305-201ENST00000362665 119 ntBASIC8.09□□□□□ -1.12
MSH6P52701 AC016397.1-201ENST00000412463 242 ntBASIC8.09□□□□□ -1.12
MSH6P52701 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC8.09□□□□□ -1.12
MSH6P52701 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC8.09□□□□□ -1.12
MSH6P52701 AC103563.5-201ENST00000455643 364 ntBASIC8.09□□□□□ -1.12
MSH6P52701 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC8.09□□□□□ -1.12
MSH6P52701 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC8.09□□□□□ -1.12
MSH6P52701 MRPS21P7-201ENST00000566937 238 ntBASIC8.09□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms