Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 RN7SKP248-201ENST00000516278 305 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 SNORA70.20-201ENST00000516848 126 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AC139365.2-201ENST00000517972 253 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AL357153.4-201ENST00000620487 1016 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 OR13C1P-202ENST00000641378 2919 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC5.89□□□□□ -1.47
LHX3Q9UBR4 AP004289.1-201ENST00000436307 2205 ntBASIC5.89□□□□□ -1.47
LHX3Q9UBR4 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AL662795.2-201ENST00000624252 3706 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AL049634.1-201ENST00000453770 1720 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 RNA5SP284-201ENST00000384547 118 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AL121977.1-201ENST00000401636 979 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 RPS3AP2-201ENST00000407190 754 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 RPS26P38-201ENST00000414476 348 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 NPM1P36-201ENST00000415681 835 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AC073410.1-201ENST00000435125 589 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 RPS23P6-201ENST00000466136 431 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AC078899.1-201ENST00000521432 1185 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 PRELID3BP3-201ENST00000584963 545 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AC006115.2-201ENST00000596823 202 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AL049840.6-201ENST00000604583 345 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AP003789.1-201ENST00000617737 605 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 AC106872.5-201ENST00000508856 1416 ntBASIC5.88□□□□□ -1.47
LHX3Q9UBR4 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LHX3Q9UBR4 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 MFSD8-239ENST00000641590 2479 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 FUNDC2P3-201ENST00000334716 533 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 MIR375-201ENST00000362103 64 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 GNG5P2-201ENST00000372054 207 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AL121578.1-201ENST00000428051 892 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC013410.1-201ENST00000436223 1232 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 SUMO2P3-201ENST00000438311 288 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AL445665.1-202ENST00000452436 324 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 RPSAP37-201ENST00000470913 821 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC009120.1-201ENST00000493458 473 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 BLNK-209ENST00000495266 440 ntTSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC105384.2-201ENST00000508433 640 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 snoU109.5-201ENST00000516231 132 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AL121594.2-201ENST00000541658 472 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC079600.1-201ENST00000550326 297 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 DPPA2P4-201ENST00000563717 878 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 MIR3614-201ENST00000581261 86 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC008521.2-201ENST00000591021 259 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms