Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 NPM1P35-201ENST00000533043 868 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AL162632.2-201ENST00000553933 399 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AL049840.5-201ENST00000602827 552 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AC067773.1-201ENST00000603284 1094 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AL513218.1-201ENST00000606527 391 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AP001437.1-201ENST00000608783 456 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AC090425.2-201ENST00000608818 501 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC6.59□□□□□ -1.35
USP39Q53GS9 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC017104.5-201ENST00000637647 639 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 PABPC1P8-201ENST00000452851 2086 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
USP39Q53GS9 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
USP39Q53GS9 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.59□□□□□ -1.36
USP39Q53GS9 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
USP39Q53GS9 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.59□□□□□ -1.36
USP39Q53GS9 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
USP39Q53GS9 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.58□□□□□ -1.36
USP39Q53GS9 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC112243.1-201ENST00000623949 3851 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 RPL22P22-201ENST00000395439 379 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC6.58□□□□□ -1.36
USP39Q53GS9 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC017078.1-201ENST00000416146 368 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AL359092.1-201ENST00000417156 265 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC6.58□□□□□ -1.36
USP39Q53GS9 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.58□□□□□ -1.36
USP39Q53GS9 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.58□□□□□ -1.36
USP39Q53GS9 RPSAP65-201ENST00000429660 595 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC6.58□□□□□ -1.36
USP39Q53GS9 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AL591719.1-201ENST00000444669 744 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AC010240.2-201ENST00000445363 1205 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.58□□□□□ -1.36
USP39Q53GS9 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC6.58□□□□□ -1.36
USP39Q53GS9 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC068228.1-201ENST00000461723 211 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 RPL7P51-201ENST00000490532 749 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC063943.2-201ENST00000495697 534 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.58□□□□□ -1.36
USP39Q53GS9 RNU4-18P-201ENST00000516751 149 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC008429.2-201ENST00000523057 864 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 HAUS1P3-201ENST00000523909 662 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC008055.1-201ENST00000547032 609 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.58□□□□□ -1.36
USP39Q53GS9 CYCSP1-201ENST00000604815 315 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AC135178.6-201ENST00000605314 398 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AL096712.1-201ENST00000614561 159 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AC009090.3-201ENST00000616553 565 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 MIR6085-201ENST00000618314 110 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC073488.9-201ENST00000631601 754 ntBASIC6.58□□□□□ -1.36
USP39Q53GS9 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.58□□□□□ -1.36
USP39Q53GS9 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms