Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU4-79P-201ENST00000362764 141 ntBASIC7.3□□□□□ -1.24
MSX1P28360 RNU5F-6P-201ENST00000362979 116 ntBASIC7.3□□□□□ -1.24
MSX1P28360 RNA5SP161-201ENST00000363871 115 ntBASIC7.3□□□□□ -1.24
MSX1P28360 PDHA1-202ENST00000379804 709 ntTSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 IGLV3-32-201ENST00000390303 383 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
MSX1P28360 ATP5J2-203ENST00000394186 305 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 RN7SKP119-201ENST00000410753 273 ntBASIC7.3□□□□□ -1.24
MSX1P28360 RANP6-201ENST00000413691 644 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 LINC00851-201ENST00000423033 727 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 AC012594.1-235ENST00000424391 727 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 AC130472.1-201ENST00000427885 309 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AL512366.1-201ENST00000438919 636 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 MTCYBP6-201ENST00000441810 138 ntBASIC7.3□□□□□ -1.24
MSX1P28360 USP9YP15-201ENST00000442391 422 ntBASIC7.3□□□□□ -1.24
MSX1P28360 LINC00460-203ENST00000444865 739 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 AC074257.1-201ENST00000446340 585 ntTSL 4 BASIC7.3□□□□□ -1.24
MSX1P28360 KDM4A-AS1-205ENST00000453015 647 ntTSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 snoU109.1-201ENST00000459339 135 ntBASIC7.3□□□□□ -1.24
MSX1P28360 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 DKK2-202ENST00000510463 908 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 AC090835.1-201ENST00000515189 1024 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AP003080.1-202ENST00000526526 915 ntBASIC7.3□□□□□ -1.24
MSX1P28360 OR6C73P-201ENST00000546432 358 ntBASIC7.3□□□□□ -1.24
MSX1P28360 GNPTAB-203ENST00000549165 373 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 AC137768.1-201ENST00000549998 553 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC079313.2-202ENST00000552053 511 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 RN7SL25P-201ENST00000583862 260 ntBASIC7.3□□□□□ -1.24
MSX1P28360 BOLA2P1-201ENST00000584794 232 ntBASIC7.3□□□□□ -1.24
MSX1P28360 RIT2-202ENST00000589109 1156 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 AL390838.2-201ENST00000602394 274 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC008738.6-201ENST00000604605 569 ntTSL 4 BASIC7.3□□□□□ -1.24
MSX1P28360 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 Metazoa_SRP.189-201ENST00000614219 303 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 AC010205.1-201ENST00000616668 449 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AP004607.9-201ENST00000618202 316 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC018692.2-201ENST00000624130 348 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC012594.1-254ENST00000628002 438 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 MIR1321-201ENST00000637766 79 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AL121936.2-201ENST00000641935 662 ntBASIC7.3□□□□□ -1.24
MSX1P28360 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 ZNF415-213ENST00000597503 2469 ntTSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 ZNF415-214ENST00000597748 2461 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 AC011632.1-202ENST00000518128 2810 ntTSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC7.3□□□□□ -1.24
MSX1P28360 AC079097.1-201ENST00000512187 1399 ntBASIC7.3□□□□□ -1.24
MSX1P28360 MAPK10-281ENST00000641170 3070 ntBASIC7.3□□□□□ -1.24
MSX1P28360 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 BTN2A1-201ENST00000312541 2920 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 AL139811.2-201ENST00000373465 1630 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC7.3□□□□□ -1.24
MSX1P28360 AC087501.5-201ENST00000607496 2374 ntBASIC7.3□□□□□ -1.24
MSX1P28360 AC103760.1-201ENST00000521326 1486 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
MSX1P28360 HEATR4-202ENST00000553558 3523 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
MSX1P28360 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
MSX1P28360 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 SLC11A2-202ENST00000262052 4132 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
MSX1P28360 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 FHL1-230ENST00000630084 1335 ntTSL 2 BASIC7.29□□□□□ -1.24
MSX1P28360 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC7.29□□□□□ -1.24
MSX1P28360 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 ACSL1-211ENST00000515030 3948 ntAPPRIS P3 TSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 AC000099.1-202ENST00000413812 1912 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 C7-201ENST00000313164 4257 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 AL353807.3-201ENST00000500626 2505 ntBASIC7.29□□□□□ -1.24
MSX1P28360 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 ABLIM3-207ENST00000508983 2011 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 PHF2P2-202ENST00000444553 2865 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC104083.1-201ENST00000569449 2615 ntBASIC7.29□□□□□ -1.24
MSX1P28360 GZMA-201ENST00000274306 894 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 COQ3-202ENST00000369240 646 ntTSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC7.29□□□□□ -1.24
MSX1P28360 AL354732.1-204ENST00000421020 755 ntTSL 3 BASIC7.29□□□□□ -1.24
MSX1P28360 AC093698.1-201ENST00000423843 571 ntBASIC7.29□□□□□ -1.24
MSX1P28360 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
MSX1P28360 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC7.29□□□□□ -1.24
MSX1P28360 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC7.29□□□□□ -1.24
MSX1P28360 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC7.29□□□□□ -1.24
MSX1P28360 GRM8-206ENST00000444921 1251 ntTSL 3 BASIC7.29□□□□□ -1.24
MSX1P28360 PYM1-204ENST00000454792 884 ntTSL 2 BASIC7.29□□□□□ -1.24
MSX1P28360 AC116353.1-201ENST00000489727 316 ntBASIC7.29□□□□□ -1.24
MSX1P28360 DYNLL1P6-201ENST00000503440 264 ntBASIC7.29□□□□□ -1.24
MSX1P28360 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms