Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
LIG1P18858 ELL2P3-201ENST00000457883 1602 ntBASIC7.78□□□□□ -1.16
LIG1P18858 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC7.78□□□□□ -1.16
LIG1P18858 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC7.78□□□□□ -1.16
LIG1P18858 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
LIG1P18858 AC104454.1-201ENST00000421341 1401 ntBASIC7.78□□□□□ -1.16
LIG1P18858 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
LIG1P18858 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
LIG1P18858 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
LIG1P18858 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC7.77□□□□□ -1.16
LIG1P18858 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.16
LIG1P18858 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC7.77□□□□□ -1.17
LIG1P18858 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC7.77□□□□□ -1.17
LIG1P18858 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
LIG1P18858 RNU4-68P-201ENST00000364314 141 ntBASIC7.77□□□□□ -1.17
LIG1P18858 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 MRPL32P1-201ENST00000406301 247 ntBASIC7.77□□□□□ -1.17
LIG1P18858 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC7.77□□□□□ -1.17
LIG1P18858 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC7.77□□□□□ -1.17
LIG1P18858 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC7.77□□□□□ -1.17
LIG1P18858 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC7.77□□□□□ -1.17
LIG1P18858 AC234781.2-201ENST00000426370 994 ntBASIC7.77□□□□□ -1.17
LIG1P18858 AC093422.3-201ENST00000428506 305 ntBASIC7.77□□□□□ -1.17
LIG1P18858 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
LIG1P18858 NPM1P23-201ENST00000440193 849 ntBASIC7.77□□□□□ -1.17
LIG1P18858 NPM1P49-201ENST00000448027 714 ntBASIC7.77□□□□□ -1.17
LIG1P18858 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC7.77□□□□□ -1.17
LIG1P18858 GAPDHP53-201ENST00000458397 924 ntBASIC7.77□□□□□ -1.17
LIG1P18858 CREM-220ENST00000463314 964 ntTSL 2 BASIC7.77□□□□□ -1.17
LIG1P18858 CBX1P5-201ENST00000475330 559 ntBASIC7.77□□□□□ -1.17
LIG1P18858 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC7.77□□□□□ -1.17
LIG1P18858 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC7.77□□□□□ -1.17
LIG1P18858 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC7.77□□□□□ -1.17
LIG1P18858 AC138409.2-202ENST00000507274 458 ntBASIC7.77□□□□□ -1.17
LIG1P18858 MTCO3P7-201ENST00000510008 774 ntBASIC7.77□□□□□ -1.17
LIG1P18858 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC7.77□□□□□ -1.17
LIG1P18858 NPM1P21-201ENST00000513394 762 ntBASIC7.77□□□□□ -1.17
LIG1P18858 HMGB1P46-201ENST00000520062 610 ntBASIC7.77□□□□□ -1.17
LIG1P18858 AC079064.1-201ENST00000528365 362 ntBASIC7.77□□□□□ -1.17
LIG1P18858 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 AC007537.1-201ENST00000539347 327 ntBASIC7.77□□□□□ -1.17
LIG1P18858 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC7.77□□□□□ -1.17
LIG1P18858 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC7.77□□□□□ -1.17
LIG1P18858 NQO1-205ENST00000561500 891 ntTSL 3 BASIC7.77□□□□□ -1.17
LIG1P18858 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC7.77□□□□□ -1.17
LIG1P18858 AC090286.3-201ENST00000573133 187 ntBASIC7.77□□□□□ -1.17
LIG1P18858 MIR5010-201ENST00000582846 120 ntBASIC7.77□□□□□ -1.17
LIG1P18858 AC079880.2-201ENST00000603790 1213 ntBASIC7.77□□□□□ -1.17
LIG1P18858 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC7.77□□□□□ -1.17
LIG1P18858 WT1-AS_8.1-201ENST00000615200 275 ntBASIC7.77□□□□□ -1.17
LIG1P18858 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC7.77□□□□□ -1.17
LIG1P18858 AC131159.1-201ENST00000621854 213 ntBASIC7.77□□□□□ -1.17
LIG1P18858 AC007671.2-201ENST00000637344 619 ntBASIC7.77□□□□□ -1.17
LIG1P18858 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
LIG1P18858 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
LIG1P18858 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.77□□□□□ -1.17
LIG1P18858 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 HSP90AA2P-201ENST00000530115 2196 ntBASIC7.77□□□□□ -1.17
LIG1P18858 AC017002.4-201ENST00000604721 1525 ntBASIC7.77□□□□□ -1.17
LIG1P18858 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.17
LIG1P18858 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIG1P18858 ZNF402P-201ENST00000404435 3100 ntBASIC7.76□□□□□ -1.17
LIG1P18858 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC7.76□□□□□ -1.17
LIG1P18858 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
LIG1P18858 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 ZNF876P-202ENST00000398732 1485 ntBASIC7.76□□□□□ -1.17
LIG1P18858 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC7.76□□□□□ -1.17
LIG1P18858 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.76□□□□□ -1.17
LIG1P18858 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 AC007114.2-201ENST00000576014 4281 ntBASIC7.76□□□□□ -1.17
LIG1P18858 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
LIG1P18858 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 Y_RNA.51-201ENST00000362725 102 ntBASIC7.76□□□□□ -1.17
LIG1P18858 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIG1P18858 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
LIG1P18858 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC7.76□□□□□ -1.17
LIG1P18858 AL355379.1-201ENST00000405542 640 ntBASIC7.76□□□□□ -1.17
LIG1P18858 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
LIG1P18858 Y_RNA.604-201ENST00000410574 102 ntBASIC7.76□□□□□ -1.17
LIG1P18858 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC7.76□□□□□ -1.17
LIG1P18858 VN1R42P-201ENST00000424651 344 ntBASIC7.76□□□□□ -1.17
LIG1P18858 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC7.76□□□□□ -1.17
LIG1P18858 AC090018.1-201ENST00000434369 367 ntBASIC7.76□□□□□ -1.17
LIG1P18858 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC7.76□□□□□ -1.17
LIG1P18858 AL356133.1-201ENST00000444762 372 ntBASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms