| MUC1 | P15941 | AC083795.1-201 | ENST00000491760 | 320 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC108866.1-203 | ENST00000504106 | 529 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC008945.1-201 | ENST00000505144 | 499 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC116634.1-201 | ENST00000506926 | 447 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | JCHAIN-204 | ENST00000510437 | 640 nt | APPRIS P1 TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | CR383658.1-201 | ENST00000514609 | 734 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC090572.3-201 | ENST00000519041 | 804 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | CRYAB-205 | ENST00000526180 | 1017 nt | APPRIS P1 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AP000620.1-201 | ENST00000527147 | 504 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC084121.1-201 | ENST00000533882 | 835 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC022509.3-201 | ENST00000535914 | 436 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | LINC02392-201 | ENST00000548172 | 537 nt | TSL 4 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL133240.1-201 | ENST00000553537 | 580 nt | TSL 4 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC073964.1-201 | ENST00000558938 | 308 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC010325.1-202 | ENST00000562076 | 279 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ZNF738-205 | ENST00000597810 | 747 nt | APPRIS ALT2 TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC124916.2-201 | ENST00000604416 | 224 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL645933.2-201 | ENST00000606743 | 1207 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | LINC02362-201 | ENST00000608785 | 516 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | LINC02362-202 | ENST00000610683 | 724 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RFPL4AP6-201 | ENST00000616792 | 846 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL031665.2-201 | ENST00000620712 | 209 nt | TSL 3 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL683826.1-201 | ENST00000624104 | 627 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AJ239318.1-201 | ENST00000624445 | 607 nt | TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | TEX41-271 | ENST00000628213 | 993 nt | TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | IFI16-205 | ENST00000368132 | 2704 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | STRBP-204 | ENST00000447404 | 6161 nt | APPRIS P1 TSL 2 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RBM22-202 | ENST00000447771 | 1386 nt | TSL 2 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC114876.1-201 | ENST00000490962 | 1366 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MEPE-202 | ENST00000395102 | 2123 nt | APPRIS ALT2 TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | BIRC3-207 | ENST00000615299 | 4342 nt | APPRIS P1 TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MID2-202 | ENST00000443968 | 2251 nt | APPRIS P1 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | KLRC4-KLRK1-201 | ENST00000539300 | 1507 nt | APPRIS P5 TSL 2 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MTCO1P28-201 | ENST00000574177 | 1528 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | NTRK3-205 | ENST00000394480 | 19984 nt | APPRIS P3 TSL 5 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MPDZ-208 | ENST00000447879 | 6262 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | N4BP2L2-IT2-201 | ENST00000629393 | 4890 nt | BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ZNF146-201 | ENST00000443387 | 3326 nt | APPRIS P1 TSL 1 (best) BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ZNF624-201 | ENST00000311331 | 4241 nt | APPRIS P1 TSL 2 BASIC | 5.12 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RIMS1-205 | ENST00000414192 | 1787 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ANK3-201 | ENST00000280772 | 16874 nt | APPRIS P3 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MKKS-202 | ENST00000399054 | 2663 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | FNIP1-201 | ENST00000307954 | 6366 nt | TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | TMC5-201 | ENST00000219821 | 3687 nt | APPRIS P3 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ZNF112-202 | ENST00000354340 | 3654 nt | APPRIS P3 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MAPK10-328 | ENST00000641553 | 4009 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ARHGAP28-205 | ENST00000531294 | 2171 nt | APPRIS ALT2 TSL 5 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ITGAV-204 | ENST00000433736 | 3288 nt | APPRIS ALT2 TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC139769.2-201 | ENST00000599944 | 2291 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MCM3AP-AS1-204 | ENST00000432735 | 2302 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC010127.1-209 | ENST00000447809 | 2305 nt | TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RNU1-65P-201 | ENST00000363919 | 148 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RN7SKP187-201 | ENST00000365536 | 330 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ADPRM-201 | ENST00000379774 | 1209 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | IFNB1-201 | ENST00000380232 | 859 nt | APPRIS P1 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | EI24P3-201 | ENST00000399046 | 1062 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL132875.1-201 | ENST00000403623 | 949 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RN7SKP166-201 | ENST00000410812 | 305 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RPS14P4-201 | ENST00000415880 | 418 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MS4A6A-202 | ENST00000420732 | 863 nt | TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | KRT8P51-201 | ENST00000438938 | 274 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC068491.1-201 | ENST00000449539 | 1241 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | CTSLP6-201 | ENST00000458273 | 1002 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RN7SL168P-201 | ENST00000463821 | 279 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | KDELR2-206 | ENST00000490996 | 655 nt | TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | OR7E99P-201 | ENST00000505750 | 922 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AZIN1-AS1-208 | ENST00000519257 | 619 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC009879.1-201 | ENST00000520029 | 839 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | TPM3P3-201 | ENST00000521343 | 354 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | NEDD8-203 | ENST00000524927 | 653 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | CCND2-AS2-201 | ENST00000537370 | 495 nt | TSL 4 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC007346.1-201 | ENST00000569208 | 867 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC010401.2-202 | ENST00000570663 | 396 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC009121.2-202 | ENST00000572706 | 505 nt | TSL 3 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | STARD6-202 | ENST00000577499 | 696 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL589935.1-201 | ENST00000602418 | 488 nt | TSL 4 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC027334.1-201 | ENST00000603257 | 310 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL049840.6-201 | ENST00000604583 | 345 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MIR6780B-201 | ENST00000610307 | 79 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC096861.1-201 | ENST00000616652 | 240 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL512652.1-201 | ENST00000619006 | 500 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AL353684.1-201 | ENST00000622677 | 1120 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC073592.6-201 | ENST00000624271 | 415 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | ZNF93-201 | ENST00000343769 | 2648 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | LGI1-212 | ENST00000630184 | 2936 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | CTTNBP2NL-201 | ENST00000271277 | 5897 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | AC004076.2-201 | ENST00000620532 | 3323 nt | BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | SAMD3-205 | ENST00000457563 | 1877 nt | TSL 2 BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | CERS3-203 | ENST00000538112 | 1856 nt | APPRIS P1 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | GABRG2-203 | ENST00000414552 | 3927 nt | TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | WDPCP-202 | ENST00000398544 | 2063 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.11 | □□□□□ -1.59 | | |
| MUC1 | P15941 | RFFL-202 | ENST00000394597 | 4227 nt | APPRIS P1 TSL 1 (best) BASIC | 5.1 | □□□□□ -1.59 | | |
| MUC1 | P15941 | MCM10-202 | ENST00000378714 | 4547 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.1 | □□□□□ -1.59 | | |
| MUC1 | P15941 | IL1RAP-205 | ENST00000412504 | 4875 nt | APPRIS P1 TSL 1 (best) BASIC | 5.1 | □□□□□ -1.59 | | |
| MUC1 | P15941 | PAK3-201 | ENST00000262836 | 2178 nt | APPRIS ALT1 TSL 1 (best) BASIC | 5.1 | □□□□□ -1.59 | | |
| MUC1 | P15941 | SPINK7-201 | ENST00000274565 | 557 nt | APPRIS P1 TSL 1 (best) BASIC | 5.1 | □□□□□ -1.59 | | |
| MUC1 | P15941 | PRIM2-201 | ENST00000274891 | 864 nt | TSL 1 (best) BASIC | 5.1 | □□□□□ -1.59 | | |
| MUC1 | P15941 | OR10A2-201 | ENST00000307322 | 1053 nt | APPRIS P1 BASIC | 5.1 | □□□□□ -1.59 | | |
| MUC1 | P15941 | FCRL5-202 | ENST00000368189 | 4424 nt | TSL 1 (best) BASIC | 5.1 | □□□□□ -1.59 | | |
| MUC1 | P15941 | C6orf163-202 | ENST00000388923 | 1308 nt | APPRIS P1 TSL 5 BASIC | 5.1 | □□□□□ -1.59 | | |