Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 Y_RNA.667-201ENST00000516212 107 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 IGKV2-19-201ENST00000518132 283 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 VTA1P2-201ENST00000520205 911 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC7.16□□□□□ -1.26
COL6A1P12109 AC087894.1-201ENST00000538359 518 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC7.16□□□□□ -1.26
COL6A1P12109 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC7.16□□□□□ -1.26
COL6A1P12109 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC7.16□□□□□ -1.26
COL6A1P12109 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC7.16□□□□□ -1.26
COL6A1P12109 TPRX1P1-201ENST00000557620 319 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AC004232.1-201ENST00000571388 208 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC7.16□□□□□ -1.26
COL6A1P12109 MIR4489-201ENST00000578869 62 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 SNORD95-201ENST00000579879 68 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AC008536.1-201ENST00000602872 669 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC7.16□□□□□ -1.26
COL6A1P12109 AL121652.1-201ENST00000608851 448 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AC092681.3-201ENST00000609463 678 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AL157392.4-201ENST00000609756 345 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 RNA5SP440-201ENST00000612665 119 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 OR8G7P-201ENST00000616658 848 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AL049767.1-202ENST00000637826 242 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 AL645568.2-201ENST00000432815 1337 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC7.15□□□□□ -1.26
COL6A1P12109 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.15□□□□□ -1.26
COL6A1P12109 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
COL6A1P12109 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC7.15□□□□□ -1.26
COL6A1P12109 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
COL6A1P12109 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
COL6A1P12109 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC7.15□□□□□ -1.26
COL6A1P12109 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
COL6A1P12109 OR52B3P-201ENST00000314715 928 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 RNU6-386P-201ENST00000362650 107 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 MTCO2P31-201ENST00000402702 684 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 EEF1B2P8-201ENST00000414101 671 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
COL6A1P12109 AL034379.1-201ENST00000423216 253 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 MTCO2P23-201ENST00000425216 680 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 AC017019.1-201ENST00000426129 261 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC7.15□□□□□ -1.26
COL6A1P12109 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC7.15□□□□□ -1.26
COL6A1P12109 NANOGP9-201ENST00000439890 892 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC7.15□□□□□ -1.26
COL6A1P12109 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC7.15□□□□□ -1.26
COL6A1P12109 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC7.15□□□□□ -1.26
COL6A1P12109 CFL1P4-201ENST00000451536 498 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC7.15□□□□□ -1.26
COL6A1P12109 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC7.15□□□□□ -1.26
COL6A1P12109 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 ATP5LP3-201ENST00000514223 304 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 IGHV4-55-201ENST00000520889 368 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC7.15□□□□□ -1.26
COL6A1P12109 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC7.15□□□□□ -1.26
COL6A1P12109 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC7.15□□□□□ -1.26
COL6A1P12109 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL6A1P12109 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC7.15□□□□□ -1.26
COL6A1P12109 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC7.15□□□□□ -1.26
COL6A1P12109 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC7.15□□□□□ -1.26
COL6A1P12109 AC013444.2-201ENST00000603317 787 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 AC012557.2-201ENST00000605919 418 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.26
COL6A1P12109 AC084824.4-201ENST00000620106 731 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 MIR8089-201ENST00000620165 82 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC7.15□□□□□ -1.26
COL6A1P12109 AC034229.6-201ENST00000623704 224 ntBASIC7.15□□□□□ -1.26
COL6A1P12109 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC7.15□□□□□ -1.27
COL6A1P12109 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC7.15□□□□□ -1.27
COL6A1P12109 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC7.15□□□□□ -1.27
COL6A1P12109 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC7.15□□□□□ -1.27
COL6A1P12109 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL6A1P12109 SPATA31C1-201ENST00000420021 3895 ntBASIC7.15□□□□□ -1.27
COL6A1P12109 AC105749.1-201ENST00000631338 2008 ntBASIC7.15□□□□□ -1.27
COL6A1P12109 AC138915.4-201ENST00000565549 4147 ntBASIC7.15□□□□□ -1.27
COL6A1P12109 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC7.15□□□□□ -1.27
COL6A1P12109 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC7.15□□□□□ -1.27
COL6A1P12109 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL6A1P12109 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms