Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 AL133268.1-201ENST00000405676 1401 ntBASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 AC117409.1-201ENST00000470499 1310 ntBASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 CIR1P2-201ENST00000514821 1342 ntBASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 AC020658.2-201ENST00000559030 4020 ntBASIC6.73□□□□□ -1.33
TRIM39Q9HCM9 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 SNORD116-2-201ENST00000384274 95 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 SNORD116-6-201ENST00000384711 96 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 Y_RNA.578-201ENST00000390903 88 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 UBBP1-201ENST00000392399 473 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AP003385.1-201ENST00000426387 893 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AL590128.1-201ENST00000433407 286 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC084290.1-201ENST00000434995 374 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 MRPL35P2-201ENST00000448009 511 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 TRY2P-201ENST00000448860 689 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 CCNJP1-201ENST00000450600 1149 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AL122001.1-201ENST00000457027 370 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RN7SL834P-201ENST00000461450 286 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RPS4XP17-201ENST00000479057 754 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RN7SL382P-201ENST00000482631 282 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC023050.1-201ENST00000498198 304 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC008837.1-201ENST00000511513 412 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC011352.2-201ENST00000514574 1016 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RN7SKP34-201ENST00000516142 244 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 OR5D2P-201ENST00000524390 911 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC027667.1-201ENST00000545814 304 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC008126.1-201ENST00000549019 480 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 MTCYBP27-201ENST00000555160 670 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 MTND4P33-201ENST00000556706 766 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AL049840.5-201ENST00000602827 552 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC021171.1-201ENST00000603137 706 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC024060.1-201ENST00000607052 494 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC091768.1-201ENST00000609258 930 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC096708.4-201ENST00000620563 552 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC078883.4-201ENST00000623218 367 ntBASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
TRIM39Q9HCM9 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
TRIM39Q9HCM9 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.71□□□□□ -1.33
TRIM39Q9HCM9 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
TRIM39Q9HCM9 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC6.71□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms