Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
TRAIPQ9BWF2 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 RNA5SP114-201ENST00000363780 113 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 RNU6-157P-201ENST00000383957 107 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 GSTA8P-201ENST00000404253 637 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 RPLP1P10-201ENST00000413972 339 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AL596448.1-201ENST00000415024 392 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 MRPS36P1-201ENST00000421291 307 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AL139421.1-201ENST00000423010 169 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC090018.1-201ENST00000434369 367 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AL354941.1-201ENST00000438600 464 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 MTND3P1-201ENST00000441336 220 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC022431.1-201ENST00000450941 438 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 SLAMF6P1-201ENST00000451067 602 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 RN7SL251P-201ENST00000464175 297 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AL079303.1-201ENST00000486611 463 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 CCDC11P1-201ENST00000503137 1162 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 RPL7L1P4-201ENST00000513004 707 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 COX6B1P6-201ENST00000522347 255 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC018442.3-201ENST00000523025 183 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC087373.1-201ENST00000524920 491 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 DUXAP1-201ENST00000556632 463 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC015726.1-201ENST00000602353 681 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC012065.3-201ENST00000602736 439 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC092032.1-201ENST00000603090 165 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC007671.1-201ENST00000616957 830 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 ATE1-AS1-202ENST00000636460 506 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 CASC19-208ENST00000641056 1292 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 SAMMSON-209ENST00000641222 1100 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 CASC19-227ENST00000641411 1285 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AL391262.1-201ENST00000556558 1992 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 NME8-201ENST00000199447 2312 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 AC007342.5-201ENST00000571340 2142 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 MFSD8-256ENST00000641949 1640 ntBASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.14
TRAIPQ9BWF2 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 AL355852.1-201ENST00000454081 1771 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 IL22-201ENST00000328087 1150 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 RNU12-2P-201ENST00000364789 156 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 RNU1-56P-201ENST00000391303 164 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 RN7SKP182-201ENST00000410772 298 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 RN7SKP166-201ENST00000410812 305 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 TEX41-202ENST00000414256 604 ntTSL 5 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 PAICSP7-201ENST00000419829 962 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 AC048351.1-201ENST00000420064 602 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 AC066692.1-201ENST00000421721 457 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 MTCO1P54-201ENST00000430139 712 ntBASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC7.95□□□□□ -1.14
TRAIPQ9BWF2 AL359265.1-201ENST00000440296 795 ntBASIC7.95□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 184.5 ms