Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 MKI67P1-201ENST00000604297 1460 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 OR4D1-201ENST00000268912 1024 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RPL11P4-201ENST00000332269 436 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 KCNIP2-202ENST00000343195 663 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RNU1-21P-201ENST00000363327 163 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL139327.1-201ENST00000382988 348 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 MTCYBP36-201ENST00000404146 440 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL139098.1-201ENST00000407291 389 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 MYB-206ENST00000420123 1051 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL031584.2-201ENST00000420585 767 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RPS27AP7-201ENST00000422792 455 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 GRM7-AS2-201ENST00000427748 520 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL606752.1-201ENST00000435442 666 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC241584.1-201ENST00000438469 1241 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC074286.1-202ENST00000441205 567 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC004865.1-201ENST00000442276 1003 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 FO393419.1-201ENST00000443746 355 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC090954.1-201ENST00000445502 361 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RPL4P2-201ENST00000447259 1282 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC009955.1-201ENST00000455896 271 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 TDGF1P6-201ENST00000463873 448 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RPL12P40-201ENST00000467028 488 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC112206.1-201ENST00000468416 477 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RPS3AP49-201ENST00000472161 790 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RPL19P11-201ENST00000495944 589 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RN7SL124P-201ENST00000498656 285 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 LINC01606-205ENST00000519314 562 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AP001124.1-201ENST00000529628 385 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 OR4A43P-201ENST00000532938 908 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 NUTF2P2-201ENST00000551207 384 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 OR11J2P-201ENST00000555298 907 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC060809.1-201ENST00000559211 564 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 LINC01572-204ENST00000570035 831 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC087499.3-201ENST00000578210 717 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RPL35AP25-201ENST00000584631 330 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC011933.4-201ENST00000585081 403 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC005495.1-201ENST00000586611 1211 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 SNRPCP20-201ENST00000588011 210 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC020914.6-201ENST00000594327 272 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL137190.1-201ENST00000603288 282 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 SNX29P2-204ENST00000603801 875 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC107214.2-201ENST00000608204 634 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AL080312.2-201ENST00000613001 630 ntBASIC5.92□□□□□ -1.46
CCDC140Q96MF4 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AC093909.4-201ENST00000514297 1991 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RAI14-220ENST00000512629 2941 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 ASCC1-201ENST00000317126 1501 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 IRAK4-201ENST00000431837 4147 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 AMZ2-210ENST00000580753 1339 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC140Q96MF4 ASNSP1-204ENST00000641977 1664 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 OR4D10-201ENST00000530162 2482 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 CRISPLD1-202ENST00000517786 1964 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AC008555.1-201ENST00000561778 2757 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 AL161891.1-201ENST00000621575 4636 ntBASIC5.91□□□□□ -1.46
CCDC140Q96MF4 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC140Q96MF4 MMP25-AS1-206ENST00000573130 4434 ntTSL 2 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms