Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AL663074.2-201ENST00000440621 479 ntBASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC118758.1-202ENST00000454719 225 ntBASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 RPSAP51-201ENST00000497462 645 ntBASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AP004609.2-201ENST00000532177 190 ntBASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 OR4A41P-201ENST00000533053 928 ntBASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AC005828.7-201ENST00000607331 556 ntBASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 MIR6823-201ENST00000622118 61 ntBASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC112Q8NEF3 UGT2B24P-201ENST00000514441 1597 ntBASIC6.52□□□□□ -1.36
CCDC112Q8NEF3 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
CCDC112Q8NEF3 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC002525.1-201ENST00000624392 1622 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 RNU105B-201ENST00000364478 208 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC112492.2-201ENST00000432774 1030 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC242426.1-201ENST00000435270 960 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC128677.1-201ENST00000436016 442 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 GAPDHP37-201ENST00000442317 968 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 SDC4P-201ENST00000453285 601 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 RPS27P20-201ENST00000492051 246 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC116917.1-201ENST00000520558 305 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 MIR3154-201ENST00000577829 84 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC125494.2-201ENST00000602431 657 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AL513327.3-201ENST00000602618 469 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AL589743.6-201ENST00000611025 117 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC007786.3-201ENST00000615154 596 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 GTF2IP4-201ENST00000453092 2054 ntBASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC112Q8NEF3 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AL133243.2-201ENST00000610331 1621 ntBASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 RN7SKP145-201ENST00000363291 303 ntBASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 RNA5SP346-201ENST00000363541 121 ntBASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 CXADRP1-201ENST00000398098 1095 ntBASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AK3P5-201ENST00000432033 519 ntBASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 EEF1B2P3-201ENST00000447718 678 ntBASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AL603882.1-201ENST00000463059 681 ntBASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AC008055.1-201ENST00000547032 609 ntBASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CCDC112Q8NEF3 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 4785.9 ms