Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 SOCS5P1-201ENST00000440415 949 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 PA2G4P1-201ENST00000442248 1197 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 GAPDHP23-201ENST00000444823 993 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AL445991.1-201ENST00000450381 475 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC090602.1-201ENST00000469695 252 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 OR6M2P-201ENST00000529831 871 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 TDGP1-201ENST00000543961 1229 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 HMGN1P26-201ENST00000558737 303 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 RNU4ATAC-201ENST00000580972 127 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC020916.2-201ENST00000591242 360 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 DYNLL1P1-201ENST00000595442 269 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC087468.1-201ENST00000604365 630 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC139792.1-201ENST00000607051 647 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC022106.1-201ENST00000612834 766 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC022919.1-201ENST00000624979 626 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 AC138907.8-201ENST00000623981 2256 ntBASIC5.71□□□□□ -1.5
CLIP4Q8N3C7 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 RNA5SP77-201ENST00000365394 120 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 RNU6-883P-201ENST00000384597 107 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 OR1F12-201ENST00000402365 945 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC015977.1-201ENST00000418887 292 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AL354766.1-201ENST00000423396 542 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC016027.5-201ENST00000427227 210 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 PPIAP10-201ENST00000438675 458 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 ARMC4P1-201ENST00000438905 707 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 RPL7L1P3-201ENST00000455249 689 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 SNX18P24-201ENST00000505249 671 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC093816.1-201ENST00000515076 913 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC124891.1-201ENST00000536322 519 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 CR383656.14-201ENST00000551951 406 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 GLYATL1P2-202ENST00000588046 902 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC090330.1-201ENST00000588646 764 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC002069.2-201ENST00000603580 883 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 SNORA35B-201ENST00000607417 129 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 SNORA74.4-201ENST00000607595 199 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AL137067.2-201ENST00000621202 131 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AC006249.1-201ENST00000621223 471 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 OR51C1P-202ENST00000641159 1444 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 KYNUP3-201ENST00000574386 1341 ntBASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
CLIP4Q8N3C7 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.69□□□□□ -1.5
CLIP4Q8N3C7 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms