Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL591623.2-201ENST00000449978 222 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 RPL31P11-202ENST00000454082 372 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 CABYRP1-201ENST00000465493 1045 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 RN7SL790P-201ENST00000474043 298 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC7.66□□□□□ -1.18
HMGB1P09429 AC122714.1-201ENST00000502510 459 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC7.66□□□□□ -1.18
HMGB1P09429 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC7.66□□□□□ -1.18
HMGB1P09429 AC011497.2-201ENST00000600255 639 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 SUMO2P14-201ENST00000604488 293 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 IGKV2OR2-7-201ENST00000604652 304 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 AC025175.1-201ENST00000606482 759 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 AC110792.4-201ENST00000609843 298 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC7.66□□□□□ -1.18
HMGB1P09429 AC025016.1-201ENST00000616746 682 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC7.66□□□□□ -1.18
HMGB1P09429 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC7.66□□□□□ -1.18
HMGB1P09429 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HMGB1P09429 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HMGB1P09429 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
HMGB1P09429 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
HMGB1P09429 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HMGB1P09429 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7.66□□□□□ -1.18
HMGB1P09429 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC7.66□□□□□ -1.18
HMGB1P09429 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HMGB1P09429 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC7.65□□□□□ -1.18
HMGB1P09429 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.18
HMGB1P09429 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.18
HMGB1P09429 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC7.65□□□□□ -1.18
HMGB1P09429 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
HMGB1P09429 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
HMGB1P09429 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
HMGB1P09429 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
HMGB1P09429 RPS27AP11-201ENST00000402798 447 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 RNA5SP155-201ENST00000411154 129 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC7.65□□□□□ -1.18
HMGB1P09429 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 AC006509.1-201ENST00000420788 634 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 AL160175.1-201ENST00000428124 247 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC7.65□□□□□ -1.18
HMGB1P09429 MTCO3P21-201ENST00000430791 643 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC7.65□□□□□ -1.18
HMGB1P09429 MED28P4-201ENST00000433137 572 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC7.65□□□□□ -1.18
HMGB1P09429 HMGN1P32-201ENST00000441744 256 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC7.65□□□□□ -1.18
HMGB1P09429 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC7.65□□□□□ -1.18
HMGB1P09429 AC114324.2-202ENST00000503812 134 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 AC093325.1-201ENST00000508378 326 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 COL6A4P2-205ENST00000509855 506 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 RNU6-1004P-201ENST00000516584 111 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC7.65□□□□□ -1.18
HMGB1P09429 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC7.65□□□□□ -1.18
HMGB1P09429 AC107918.3-201ENST00000533272 382 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC7.65□□□□□ -1.18
HMGB1P09429 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC7.65□□□□□ -1.18
HMGB1P09429 RPL3P13-201ENST00000550415 216 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC7.65□□□□□ -1.18
HMGB1P09429 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC7.65□□□□□ -1.18
HMGB1P09429 SYPL1P2-201ENST00000582878 727 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 AC233702.7-202ENST00000582941 211 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 MIR3159-201ENST00000584572 74 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 AC005702.3-201ENST00000585345 1447 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC7.65□□□□□ -1.18
HMGB1P09429 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC7.65□□□□□ -1.18
HMGB1P09429 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HMGB1P09429 AC063977.7-201ENST00000594454 337 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
HMGB1P09429 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
HMGB1P09429 OR7A1P-202ENST00000641542 1158 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 STX3-208ENST00000641815 3236 ntBASIC7.65□□□□□ -1.18
HMGB1P09429 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.19
HMGB1P09429 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.19
HMGB1P09429 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
HMGB1P09429 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.19
HMGB1P09429 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC7.65□□□□□ -1.19
HMGB1P09429 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC7.64□□□□□ -1.19
HMGB1P09429 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC7.64□□□□□ -1.19
HMGB1P09429 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC7.64□□□□□ -1.19
HMGB1P09429 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
HMGB1P09429 RPL31P11-201ENST00000426558 1558 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 FANCD2P2-201ENST00000437591 1400 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 AC119674.1-213ENST00000641177 1386 ntBASIC7.64□□□□□ -1.19
HMGB1P09429 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
HMGB1P09429 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.64□□□□□ -1.19
HMGB1P09429 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms