Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU6-759P-201ENST00000516740 103 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA3O43365 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA3O43365 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA3O43365 OXR1-212ENST00000521592 993 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 PTPRJ-AS1-201ENST00000533964 301 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC009729.1-201ENST00000548873 1133 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 NBEAP1-201ENST00000554452 979 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC087465.1-201ENST00000560574 245 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 MT1B-202ENST00000562399 351 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA3O43365 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC064872.1-201ENST00000604823 1072 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 AC004492.1-201ENST00000607036 742 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 AC012557.1-201ENST00000607115 611 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 OR2BH1P-201ENST00000608850 864 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 AC122133.1-201ENST00000613964 233 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC130456.6-201ENST00000623745 765 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 AC091965.5-201ENST00000624785 342 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 MBD5-221ENST00000637159 902 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.72□□□□□ -1.49
HOXA3O43365 AC119674.1-201ENST00000641611 1210 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 ZNF663P-202ENST00000641770 1131 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA3O43365 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA3O43365 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 API5P1-201ENST00000424316 1510 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
HOXA3O43365 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA3O43365 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA3O43365 AC061975.5-201ENST00000584928 1441 ntBASIC5.72□□□□□ -1.49
HOXA3O43365 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA3O43365 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
HOXA3O43365 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA3O43365 AC061975.7-201ENST00000592016 2692 ntBASIC5.71□□□□□ -1.49
HOXA3O43365 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA3O43365 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA3O43365 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA3O43365 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC5.71□□□□□ -1.49
HOXA3O43365 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.49
HOXA3O43365 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA3O43365 AC068860.1-201ENST00000623701 3736 ntBASIC5.71□□□□□ -1.49
HOXA3O43365 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HOXA3O43365 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA3O43365 AC092725.2-201ENST00000567658 1389 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA3O43365 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA3O43365 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
HOXA3O43365 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA3O43365 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA3O43365 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA3O43365 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA3O43365 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA3O43365 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HOXA3O43365 SNORA40.2-201ENST00000390847 128 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA3O43365 AL360013.1-201ENST00000419031 858 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 RPA2P2-201ENST00000419698 796 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA3O43365 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXA3O43365 AKR1B10P1-201ENST00000425765 942 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 GAPDHP51-201ENST00000426454 1000 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 FO393419.3-201ENST00000428741 282 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 MYO5BP3-201ENST00000431872 1279 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AC245047.1-201ENST00000433276 873 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AL138787.1-202ENST00000437804 898 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 ELOCP8-201ENST00000439309 332 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA3O43365 NPM1P23-201ENST00000440193 849 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 GTF2IP14-201ENST00000441415 586 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 ELOCP15-201ENST00000442090 332 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC5.71□□□□□ -1.5
HOXA3O43365 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA3O43365 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA3O43365 RPL31P11-202ENST00000454082 372 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXA3O43365 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA3O43365 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXA3O43365 SNRPCP11-201ENST00000492453 205 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 NAA50-206ENST00000493454 964 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXA3O43365 AC080014.1-201ENST00000496877 1201 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AC090058.1-201ENST00000498788 435 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AC107401.1-201ENST00000503426 685 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 PSMA2P2-201ENST00000504319 686 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AC138409.2-202ENST00000507274 458 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 PGAM4P2-201ENST00000512491 721 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 MTND3P5-201ENST00000512798 333 ntBASIC5.71□□□□□ -1.5
HOXA3O43365 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXA3O43365 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms