Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 AC023245.2-201ENST00000530760 2978 ntBASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC7.58□□□□□ -1.2
SMC1BQ8NDV3 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 CCNT2P1-201ENST00000423082 1315 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 Z93929.1-201ENST00000418200 1475 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 SNORD16-201ENST00000362803 99 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 CCNB2P1-201ENST00000399411 1150 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 BX323845.3-201ENST00000428215 527 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AC073508.1-201ENST00000428866 656 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 FABP7P2-201ENST00000429946 379 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 VDAC1P6-201ENST00000430062 855 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AL512605.1-202ENST00000441919 381 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AL359955.2-201ENST00000445380 353 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 GAS5-218ENST00000448718 565 ntTSL 2 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 CBX1P2-201ENST00000453841 458 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 COPS8P2-201ENST00000473228 627 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 RN7SL727P-201ENST00000482164 296 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 SETP21-201ENST00000514799 892 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 RNU6-415P-201ENST00000516252 97 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 RNU6-943P-201ENST00000516960 98 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 MTND1P8-201ENST00000571424 950 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AP001496.3-201ENST00000580230 913 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AP005119.1-201ENST00000580956 292 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 AL356608.1-201ENST00000610034 820 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 OR8G3P-202ENST00000641572 1255 ntBASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
SMC1BQ8NDV3 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AL136984.1-201ENST00000607611 1893 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 SNORA11-201ENST00000408789 128 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 RPL12P43-201ENST00000420608 499 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AC009784.1-201ENST00000426484 460 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 EIF4A1P6-201ENST00000448133 1210 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 RNU7-157P-201ENST00000459600 66 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 TPT1P8-201ENST00000510120 555 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 SUMO2P7-201ENST00000511179 285 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 SCARNA1-201ENST00000517138 166 ntBASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 CLMN-206ENST00000556441 452 ntTSL 5 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC7.56□□□□□ -1.2
SMC1BQ8NDV3 AC106785.4-201ENST00000569492 412 ntBASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms