Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AP000563.1-201ENST00000490865 758 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 RBBP4P1-201ENST00000502424 1276 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 UGT2B27P-201ENST00000505092 1620 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AC011352.2-201ENST00000514574 1016 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 RNU6-964P-201ENST00000516524 69 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 IGLVIV-64-201ENST00000518581 301 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 OR8G5-201ENST00000524943 1041 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC6.63□□□□□ -1.35
USP39Q53GS9 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AC023968.1-201ENST00000560719 475 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 AL596244.1-201ENST00000567068 3779 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 MIR5095-201ENST00000578844 88 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 AP001094.1-201ENST00000579805 193 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
USP39Q53GS9 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AC092944.2-201ENST00000605443 889 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 MIR6729-201ENST00000618194 65 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 AP003485.2-201ENST00000623636 610 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 LGI1-209ENST00000627699 664 ntTSL 3 BASIC6.63□□□□□ -1.35
USP39Q53GS9 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
USP39Q53GS9 CASC19-222ENST00000641321 1173 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 AC119674.1-204ENST00000641348 1343 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
USP39Q53GS9 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AL033543.1-201ENST00000623440 13454 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
USP39Q53GS9 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
USP39Q53GS9 AC079949.2-201ENST00000617117 2933 ntBASIC6.63□□□□□ -1.35
USP39Q53GS9 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
USP39Q53GS9 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AP000866.6-201ENST00000638898 3579 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
USP39Q53GS9 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.62□□□□□ -1.35
USP39Q53GS9 BX284613.1-201ENST00000452221 1641 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.62□□□□□ -1.35
USP39Q53GS9 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.62□□□□□ -1.35
USP39Q53GS9 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
USP39Q53GS9 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 AL022323.4-201ENST00000623980 13120 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.62□□□□□ -1.35
USP39Q53GS9 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AC096656.1-201ENST00000623826 1364 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 NEK2P4-201ENST00000425793 1329 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AL512310.3-201ENST00000547023 1335 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
USP39Q53GS9 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AC004386.1-201ENST00000393214 761 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 SNORA81-201ENST00000408493 178 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.62□□□□□ -1.35
USP39Q53GS9 TMA16P2-201ENST00000413187 601 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 USP9YP21-201ENST00000420603 432 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC6.62□□□□□ -1.35
USP39Q53GS9 MTCO1P57-201ENST00000432182 261 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 Z85994.2-201ENST00000434327 452 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AL645931.1-201ENST00000439737 410 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 PPIAP20-201ENST00000449839 135 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 OR52I1-201ENST00000450052 1050 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AP002453.1-201ENST00000492327 668 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 PRELID3BP7-201ENST00000503606 469 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AC018645.1-201ENST00000505003 109 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AP001960.1-201ENST00000506494 658 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AC125611.1-201ENST00000549563 229 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.62□□□□□ -1.35
USP39Q53GS9 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC6.62□□□□□ -1.35
USP39Q53GS9 RN7SL404P-201ENST00000582421 281 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AL358072.1-201ENST00000604156 575 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 AL450336.1-201ENST00000605180 586 ntBASIC6.62□□□□□ -1.35
USP39Q53GS9 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 152.2 ms