Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PKNOX1P55347 AP002453.1-201ENST00000492327 668 ntBASIC5.77□□□□□ -1.49
PKNOX1P55347 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.77□□□□□ -1.49
PKNOX1P55347 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
PKNOX1P55347 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.77□□□□□ -1.49
PKNOX1P55347 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.77□□□□□ -1.49
PKNOX1P55347 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.77□□□□□ -1.49
PKNOX1P55347 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.77□□□□□ -1.49
PKNOX1P55347 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.77□□□□□ -1.49
PKNOX1P55347 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.77□□□□□ -1.49
PKNOX1P55347 RPL12P48-201ENST00000605620 304 ntBASIC5.77□□□□□ -1.49
PKNOX1P55347 AC139792.1-201ENST00000607051 647 ntBASIC5.77□□□□□ -1.49
PKNOX1P55347 AL133481.2-203ENST00000607558 139 ntBASIC5.77□□□□□ -1.49
PKNOX1P55347 AC012676.3-201ENST00000614983 479 ntBASIC5.77□□□□□ -1.49
PKNOX1P55347 AL589935.2-201ENST00000616471 1231 ntBASIC5.77□□□□□ -1.49
PKNOX1P55347 RNA5SP439-201ENST00000617595 124 ntBASIC5.77□□□□□ -1.49
PKNOX1P55347 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.77□□□□□ -1.49
PKNOX1P55347 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.77□□□□□ -1.49
PKNOX1P55347 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.77□□□□□ -1.49
PKNOX1P55347 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PKNOX1P55347 GNL2P1-201ENST00000451274 2190 ntBASIC5.77□□□□□ -1.49
PKNOX1P55347 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
PKNOX1P55347 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
PKNOX1P55347 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
PKNOX1P55347 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
PKNOX1P55347 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.77□□□□□ -1.49
PKNOX1P55347 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
PKNOX1P55347 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AL442128.2-201ENST00000620246 1824 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
PKNOX1P55347 MTCO1P28-201ENST00000574177 1528 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
PKNOX1P55347 RNU1-134P-201ENST00000362935 165 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 RNU6-673P-201ENST00000365084 104 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 ADAM24P-201ENST00000398655 2101 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.76□□□□□ -1.49
PKNOX1P55347 METTL15P3-201ENST00000415522 1221 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.76□□□□□ -1.49
PKNOX1P55347 RPL7AP51-201ENST00000422016 760 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC099670.2-201ENST00000435130 321 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AC096775.1-201ENST00000437724 448 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.76□□□□□ -1.49
PKNOX1P55347 RPL12P39-201ENST00000455456 496 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC5.76□□□□□ -1.49
PKNOX1P55347 RPL38P3-201ENST00000484463 213 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 SNRPCP11-201ENST00000492453 205 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.76□□□□□ -1.49
PKNOX1P55347 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.76□□□□□ -1.49
PKNOX1P55347 MT1CP-201ENST00000567054 174 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.76□□□□□ -1.49
PKNOX1P55347 MIR4433B-201ENST00000581329 102 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 MIR4701-201ENST00000583094 63 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC5.76□□□□□ -1.49
PKNOX1P55347 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.76□□□□□ -1.49
PKNOX1P55347 SMIM12P1-201ENST00000603004 274 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC073389.3-201ENST00000609434 935 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 AC079776.5-201ENST00000641920 211 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 RBMY1HP-201ENST00000382759 1389 ntBASIC5.76□□□□□ -1.49
PKNOX1P55347 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.76□□□□□ -1.49
PKNOX1P55347 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
PKNOX1P55347 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.76□□□□□ -1.49
PKNOX1P55347 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
PKNOX1P55347 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
PKNOX1P55347 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.75□□□□□ -1.49
PKNOX1P55347 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
PKNOX1P55347 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
PKNOX1P55347 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
PKNOX1P55347 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
PKNOX1P55347 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
PKNOX1P55347 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
PKNOX1P55347 AC099654.3-201ENST00000447087 1546 ntBASIC5.75□□□□□ -1.49
PKNOX1P55347 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
PKNOX1P55347 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
PKNOX1P55347 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
PKNOX1P55347 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
PKNOX1P55347 RN7SKP38-201ENST00000410782 309 ntBASIC5.75□□□□□ -1.49
PKNOX1P55347 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.75□□□□□ -1.49
PKNOX1P55347 AL354766.1-201ENST00000423396 542 ntBASIC5.75□□□□□ -1.49
PKNOX1P55347 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.75□□□□□ -1.49
PKNOX1P55347 CRIP1P1-201ENST00000427567 185 ntBASIC5.75□□□□□ -1.49
PKNOX1P55347 LINC00328-2P-201ENST00000436585 219 ntBASIC5.75□□□□□ -1.49
PKNOX1P55347 RPS7P3-201ENST00000443360 580 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms