Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC9.59□□□□□ -0.87
CUX1P39880 AP000676.2-201ENST00000529711 301 ntBASIC9.59□□□□□ -0.87
CUX1P39880 NMNAT1P5-201ENST00000559657 841 ntBASIC9.59□□□□□ -0.87
CUX1P39880 AC087763.1-201ENST00000603391 286 ntBASIC9.59□□□□□ -0.87
CUX1P39880 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC9.59□□□□□ -0.87
CUX1P39880 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX1P39880 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX1P39880 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
CUX1P39880 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 TMEM75-201ENST00000624314 2165 ntBASIC9.59□□□□□ -0.87
CUX1P39880 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC9.59□□□□□ -0.87
CUX1P39880 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
CUX1P39880 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
CUX1P39880 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
CUX1P39880 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
CUX1P39880 AC136624.1-201ENST00000400791 413 ntBASIC9.58□□□□□ -0.88
CUX1P39880 AC007562.1-201ENST00000421819 517 ntBASIC9.58□□□□□ -0.88
CUX1P39880 AC011742.2-201ENST00000443818 352 ntBASIC9.58□□□□□ -0.88
CUX1P39880 AC092106.1-201ENST00000444291 373 ntBASIC9.58□□□□□ -0.88
CUX1P39880 AC023274.2-201ENST00000445264 521 ntBASIC9.58□□□□□ -0.88
CUX1P39880 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC9.58□□□□□ -0.88
CUX1P39880 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC9.58□□□□□ -0.88
CUX1P39880 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC9.58□□□□□ -0.88
CUX1P39880 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC9.58□□□□□ -0.88
CUX1P39880 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC9.58□□□□□ -0.88
CUX1P39880 IGLV3-24-201ENST00000517477 197 ntBASIC9.58□□□□□ -0.88
CUX1P39880 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC9.58□□□□□ -0.88
CUX1P39880 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC9.58□□□□□ -0.88
CUX1P39880 POT1-202ENST00000393329 3950 ntTSL 5 BASIC9.58□□□□□ -0.88
CUX1P39880 AC112243.1-201ENST00000623949 3851 ntBASIC9.58□□□□□ -0.88
CUX1P39880 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC9.58□□□□□ -0.88
CUX1P39880 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
CUX1P39880 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
CUX1P39880 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC9.57□□□□□ -0.88
CUX1P39880 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC9.57□□□□□ -0.88
CUX1P39880 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC9.57□□□□□ -0.88
CUX1P39880 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC9.57□□□□□ -0.88
CUX1P39880 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC9.57□□□□□ -0.88
CUX1P39880 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC9.57□□□□□ -0.88
CUX1P39880 VN1R54P-201ENST00000435210 1049 ntBASIC9.57□□□□□ -0.88
CUX1P39880 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC9.57□□□□□ -0.88
CUX1P39880 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC9.57□□□□□ -0.88
CUX1P39880 AC074255.1-201ENST00000511259 501 ntBASIC9.57□□□□□ -0.88
CUX1P39880 BLZF2P-201ENST00000553776 1130 ntBASIC9.57□□□□□ -0.88
CUX1P39880 AL049779.3-201ENST00000557141 606 ntBASIC9.57□□□□□ -0.88
CUX1P39880 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC9.57□□□□□ -0.88
CUX1P39880 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC9.57□□□□□ -0.88
CUX1P39880 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
CUX1P39880 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 AL662795.2-201ENST00000624252 3706 ntBASIC9.57□□□□□ -0.88
CUX1P39880 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC9.57□□□□□ -0.88
CUX1P39880 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC9.57□□□□□ -0.88
CUX1P39880 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
CUX1P39880 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
CUX1P39880 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC9.56□□□□□ -0.88
CUX1P39880 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC9.56□□□□□ -0.88
CUX1P39880 AC022832.1-201ENST00000530718 645 ntBASIC9.56□□□□□ -0.88
CUX1P39880 CASC22-201ENST00000569713 386 ntTSL 5 BASIC9.56□□□□□ -0.88
CUX1P39880 LINC01739-205ENST00000641890 573 ntBASIC9.56□□□□□ -0.88
CUX1P39880 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC9.56□□□□□ -0.88
CUX1P39880 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
CUX1P39880 AC092724.1-201ENST00000624623 3397 ntBASIC9.56□□□□□ -0.88
CUX1P39880 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.88
CUX1P39880 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC9.56□□□□□ -0.88
CUX1P39880 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
CUX1P39880 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.88
CUX1P39880 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC9.56□□□□□ -0.88
CUX1P39880 AP003119.3-201ENST00000566747 4192 ntBASIC9.56□□□□□ -0.88
CUX1P39880 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC9.56□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms