Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AC079791.1-201ENST00000605356 973 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AF287957.1-201ENST00000607368 1595 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 MIR6793-201ENST00000612376 63 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AC126175.1-201ENST00000617041 758 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AL136228.1-201ENST00000622221 319 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AP003400.2-201ENST00000624036 666 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 CCAT2-201ENST00000630920 1752 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 OR4G1P-202ENST00000641173 1788 ntBASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC3Q9BQI4 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 OR11H13P-201ENST00000359695 979 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 SNORA43.1-201ENST00000364863 140 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 UBE2V2P1-201ENST00000434717 398 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 NDUFS5P5-201ENST00000437256 321 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 GAPDHP23-201ENST00000444823 993 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC092865.4-201ENST00000477936 615 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 SETP21-201ENST00000514799 892 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 RNA5SP116-201ENST00000516132 98 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC084033.1-201ENST00000550830 633 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC005244.1-201ENST00000582566 339 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 NPIPB1P-202ENST00000588786 828 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC024589.2-201ENST00000605642 1294 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AL645933.2-201ENST00000606743 1207 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC109309.2-201ENST00000612597 332 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AP005212.4-201ENST00000614206 710 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC069542.2-201ENST00000624816 216 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 KCNMB3P1-202ENST00000493696 3389 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 FTO-215ENST00000636491 1676 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 CASC19-243ENST00000641588 1546 ntBASIC5.94□□□□□ -1.46
CCDC3Q9BQI4 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 OFD1P17-201ENST00000437639 3018 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 RNF19BPY-201ENST00000458209 1550 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 MIR1203-201ENST00000408812 85 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 EEF1B2P8-201ENST00000414101 671 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC079355.1-201ENST00000421770 223 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 RPL12P12-201ENST00000424633 501 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 ZNF619P1-201ENST00000446539 752 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AP006222.1-205ENST00000450734 457 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 AC002075.1-201ENST00000457396 676 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 UBFD1P1-201ENST00000473259 814 ntBASIC5.93□□□□□ -1.46
CCDC3Q9BQI4 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms