Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC016583.1-201ENST00000624221 2431 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
VPS35Q96QK1 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS35Q96QK1 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 PTCD2P2-201ENST00000415579 1095 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
VPS35Q96QK1 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 OR52E7P-201ENST00000452394 933 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 RN7SL352P-201ENST00000466002 277 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC092865.4-201ENST00000477936 615 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC012123.2-201ENST00000485809 248 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AL158068.1-201ENST00000506116 616 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC111000.5-201ENST00000506559 1178 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 OR56A7P-201ENST00000524865 941 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC008507.3-201ENST00000585753 472 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AL357562.1-201ENST00000624911 609 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC005725.1-201ENST00000577346 2607 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC008627.1-201ENST00000517511 1704 ntBASIC6.02□□□□□ -1.45
VPS35Q96QK1 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
VPS35Q96QK1 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
VPS35Q96QK1 AC087516.1-201ENST00000561236 2428 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS35Q96QK1 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS35Q96QK1 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS35Q96QK1 IFIT1P1-201ENST00000400497 1449 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS35Q96QK1 Z95114.1-201ENST00000624264 14574 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 RNA5SP375-201ENST00000362975 119 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 MIR130B-202ENST00000385018 82 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 AL360271.1-201ENST00000395679 510 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS35Q96QK1 RN7SKP166-201ENST00000410812 305 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 AC016027.5-201ENST00000427227 210 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS35Q96QK1 CFL1P4-201ENST00000451536 498 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 AC023194.2-201ENST00000465398 406 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 BCAS2P1-201ENST00000528022 632 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 RPA2P1-201ENST00000556557 721 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 CYCSP38-201ENST00000559840 322 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
VPS35Q96QK1 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
VPS35Q96QK1 MSL3P1-202ENST00000440028 1468 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 MTCO1P46-201ENST00000451639 1491 ntBASIC6.01□□□□□ -1.45
VPS35Q96QK1 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.01□□□□□ -1.45
VPS35Q96QK1 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
VPS35Q96QK1 AC119674.1-202ENST00000641333 1860 ntBASIC6□□□□□ -1.45
VPS35Q96QK1 GNL2P1-201ENST00000451274 2190 ntBASIC6□□□□□ -1.45
VPS35Q96QK1 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6□□□□□ -1.45
VPS35Q96QK1 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6□□□□□ -1.45
VPS35Q96QK1 AL442128.2-201ENST00000620246 1824 ntBASIC6□□□□□ -1.45
VPS35Q96QK1 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
VPS35Q96QK1 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
VPS35Q96QK1 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6□□□□□ -1.45
VPS35Q96QK1 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC6□□□□□ -1.45
VPS35Q96QK1 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6□□□□□ -1.45
VPS35Q96QK1 TRAV35-201ENST00000390462 330 ntBASIC6□□□□□ -1.45
VPS35Q96QK1 DPPA2P2-201ENST00000418220 897 ntBASIC6□□□□□ -1.45
VPS35Q96QK1 AC015977.1-201ENST00000418887 292 ntBASIC6□□□□□ -1.45
VPS35Q96QK1 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6□□□□□ -1.45
VPS35Q96QK1 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 204.2 ms