Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC147055.1-201ENST00000509261 750 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AP003033.2-201ENST00000528901 805 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC023968.1-201ENST00000560719 475 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC122134.1-201ENST00000565664 1104 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC011500.1-201ENST00000601963 469 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC019257.2-201ENST00000605539 497 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AL135786.2-201ENST00000608422 615 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC015922.4-201ENST00000612568 690 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 MIR6889-201ENST00000613185 59 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC107905.1-201ENST00000616204 426 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VMP1Q96GC9 FGG-201ENST00000336098 1659 ntTSL 2 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 AL356317.1-201ENST00000396110 1436 ntBASIC6.06□□□□□ -1.44
VMP1Q96GC9 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VMP1Q96GC9 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VMP1Q96GC9 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
VMP1Q96GC9 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC079753.1-201ENST00000623243 3868 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 HMGA1P8-201ENST00000414130 321 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 AL139184.1-202ENST00000422303 222 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC083862.1-201ENST00000427378 1242 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 LINC00328-2P-201ENST00000436585 219 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 HMGN1P8-201ENST00000463578 288 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC135983.3-201ENST00000528049 1226 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 EIF4A2P5-201ENST00000529914 499 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 OR52K3P-201ENST00000531655 943 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 TXNP4-201ENST00000575018 310 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AC012368.3-201ENST00000604190 219 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AL592494.3-201ENST00000609485 464 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 AP001264.1-201ENST00000620602 703 ntBASIC6.05□□□□□ -1.44
VMP1Q96GC9 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.05□□□□□ -1.44
VMP1Q96GC9 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VMP1Q96GC9 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VMP1Q96GC9 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VMP1Q96GC9 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
VMP1Q96GC9 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.04□□□□□ -1.44
VMP1Q96GC9 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.04□□□□□ -1.44
VMP1Q96GC9 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
VMP1Q96GC9 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms