Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
FOXA3P55318 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA3P55318 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA3P55318 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA3P55318 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA3P55318 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA3P55318 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA3P55318 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
FOXA3P55318 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
FOXA3P55318 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC4.4□□□□□ -1.7
FOXA3P55318 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA3P55318 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC4.4□□□□□ -1.7
FOXA3P55318 ALB-220ENST00000621628 1606 ntTSL 5 BASIC4.4□□□□□ -1.7
FOXA3P55318 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA3P55318 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.4□□□□□ -1.71
FOXA3P55318 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 RN7SKP1-201ENST00000365525 307 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
FOXA3P55318 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
FOXA3P55318 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 RPS14P4-201ENST00000415880 418 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 RPL21P50-201ENST00000417698 477 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 YWHAZP5-201ENST00000419975 730 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 OR10T1P-201ENST00000424327 947 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 VN1R21P-201ENST00000426703 765 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 RPL12P18-201ENST00000437175 325 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 EMC3-AS1-205ENST00000438698 534 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXA3P55318 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXA3P55318 AL353803.3-201ENST00000444641 335 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 PFN1P6-201ENST00000476786 399 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.4□□□□□ -1.71
FOXA3P55318 SUMO2P4-201ENST00000504193 276 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 OR4D12P-201ENST00000509361 911 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 RNA5SP418-201ENST00000515951 117 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 SEPT10P1-201ENST00000517342 1162 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 OR7E158P-201ENST00000524483 910 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 AC044839.3-201ENST00000532068 860 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 AC234917.1-201ENST00000534006 316 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 RN7SL426P-201ENST00000579106 295 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXA3P55318 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC4.4□□□□□ -1.71
FOXA3P55318 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXA3P55318 HIRAP1-201ENST00000605318 787 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
FOXA3P55318 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC4.4□□□□□ -1.71
FOXA3P55318 JAKMIP2-AS1-202ENST00000627433 831 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC4.4□□□□□ -1.71
FOXA3P55318 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA3P55318 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 AC104964.3-201ENST00000606115 2860 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
FOXA3P55318 FHL5-203ENST00000541107 1904 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
FOXA3P55318 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 TCP11X1-202ENST00000622971 1372 ntBASIC4.4□□□□□ -1.71
FOXA3P55318 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA3P55318 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
FOXA3P55318 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 AC007938.2-201ENST00000604666 2634 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
FOXA3P55318 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA3P55318 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
FOXA3P55318 AC026310.1-201ENST00000396004 378 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 AC226101.1-201ENST00000401483 387 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 RN7SKP221-201ENST00000410420 301 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 MICG-208ENST00000416822 132 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 E2F6P1-201ENST00000428850 745 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 CCNB1IP1P1-201ENST00000428976 839 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 E2F6P3-201ENST00000441743 743 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA3P55318 AL845321.1-201ENST00000444603 348 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC4.39□□□□□ -1.71
FOXA3P55318 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms