Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC8.28□□□□□ -1.08
MSH6P52701 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 LINC01963-201ENST00000562038 3148 ntBASIC8.28□□□□□ -1.08
MSH6P52701 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 RNA5SP478-201ENST00000364657 115 ntBASIC8.28□□□□□ -1.08
MSH6P52701 UBE2V1P14-201ENST00000415815 558 ntBASIC8.28□□□□□ -1.08
MSH6P52701 AC113412.1-201ENST00000425840 504 ntBASIC8.28□□□□□ -1.08
MSH6P52701 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC8.28□□□□□ -1.08
MSH6P52701 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC8.28□□□□□ -1.08
MSH6P52701 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC8.28□□□□□ -1.08
MSH6P52701 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC8.28□□□□□ -1.08
MSH6P52701 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC8.28□□□□□ -1.08
MSH6P52701 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC8.28□□□□□ -1.08
MSH6P52701 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC8.28□□□□□ -1.08
MSH6P52701 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC8.28□□□□□ -1.08
MSH6P52701 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC8.28□□□□□ -1.08
MSH6P52701 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC8.28□□□□□ -1.08
MSH6P52701 AC105105.5-201ENST00000622635 1294 ntBASIC8.28□□□□□ -1.08
MSH6P52701 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
MSH6P52701 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
MSH6P52701 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC8.28□□□□□ -1.08
MSH6P52701 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH6P52701 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.08
MSH6P52701 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.08
MSH6P52701 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH6P52701 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH6P52701 FO082842.1-201ENST00000423552 1370 ntBASIC8.27□□□□□ -1.09
MSH6P52701 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSH6P52701 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC8.27□□□□□ -1.09
MSH6P52701 RNA5SP350-201ENST00000363298 111 ntBASIC8.27□□□□□ -1.09
MSH6P52701 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC8.27□□□□□ -1.09
MSH6P52701 METTL15P3-201ENST00000415522 1221 ntBASIC8.27□□□□□ -1.09
MSH6P52701 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC8.27□□□□□ -1.09
MSH6P52701 HMGB1P32-201ENST00000425971 565 ntBASIC8.27□□□□□ -1.09
MSH6P52701 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC8.27□□□□□ -1.09
MSH6P52701 VN1R54P-201ENST00000435210 1049 ntBASIC8.27□□□□□ -1.09
MSH6P52701 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC8.27□□□□□ -1.09
MSH6P52701 RPS7P3-201ENST00000443360 580 ntBASIC8.27□□□□□ -1.09
MSH6P52701 DAP3-209ENST00000465375 729 ntTSL 2 BASIC8.27□□□□□ -1.09
MSH6P52701 OARD1-211ENST00000480585 829 ntTSL 3 BASIC8.27□□□□□ -1.09
MSH6P52701 RPS4XP1-201ENST00000482189 787 ntBASIC8.27□□□□□ -1.09
MSH6P52701 AC090142.2-201ENST00000483263 416 ntBASIC8.27□□□□□ -1.09
MSH6P52701 ST13P12-201ENST00000508958 1094 ntBASIC8.27□□□□□ -1.09
MSH6P52701 IGLV3-30-201ENST00000524362 298 ntBASIC8.27□□□□□ -1.09
MSH6P52701 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC8.27□□□□□ -1.09
MSH6P52701 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC8.27□□□□□ -1.09
MSH6P52701 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC8.27□□□□□ -1.09
MSH6P52701 MIR3691-201ENST00000578066 90 ntBASIC8.27□□□□□ -1.09
MSH6P52701 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH6P52701 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC8.27□□□□□ -1.09
MSH6P52701 AL445647.2-201ENST00000615170 130 ntBASIC8.27□□□□□ -1.09
MSH6P52701 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH6P52701 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
MSH6P52701 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH6P52701 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSH6P52701 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSH6P52701 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.09
MSH6P52701 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
MSH6P52701 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSH6P52701 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSH6P52701 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSH6P52701 OR10R3P-201ENST00000361688 942 ntBASIC8.26□□□□□ -1.09
MSH6P52701 U8.4-201ENST00000363626 134 ntBASIC8.26□□□□□ -1.09
MSH6P52701 MIR433-201ENST00000384837 93 ntBASIC8.26□□□□□ -1.09
MSH6P52701 RN7SKP29-201ENST00000410957 272 ntBASIC8.26□□□□□ -1.09
MSH6P52701 SLC35E1P1-201ENST00000419313 864 ntBASIC8.26□□□□□ -1.09
MSH6P52701 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSH6P52701 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC8.26□□□□□ -1.09
MSH6P52701 RNA5SP400-201ENST00000517155 111 ntBASIC8.26□□□□□ -1.09
MSH6P52701 MRPS16P1-201ENST00000523462 412 ntBASIC8.26□□□□□ -1.09
MSH6P52701 OR8G3P-201ENST00000533406 921 ntBASIC8.26□□□□□ -1.09
MSH6P52701 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC8.26□□□□□ -1.09
MSH6P52701 AC136428.4-201ENST00000634254 1155 ntBASIC8.26□□□□□ -1.09
MSH6P52701 AP000550.3-201ENST00000637734 379 ntBASIC8.26□□□□□ -1.09
MSH6P52701 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSH6P52701 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSH6P52701 AC016583.1-201ENST00000624221 2431 ntBASIC8.26□□□□□ -1.09
MSH6P52701 AC022905.1-201ENST00000503430 3048 ntBASIC8.26□□□□□ -1.09
MSH6P52701 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC8.26□□□□□ -1.09
MSH6P52701 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
MSH6P52701 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC8.25□□□□□ -1.09
MSH6P52701 AC013488.1-201ENST00000526618 1838 ntBASIC8.25□□□□□ -1.09
MSH6P52701 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC8.25□□□□□ -1.09
MSH6P52701 CREM-217ENST00000439705 2306 ntTSL 5 BASIC8.25□□□□□ -1.09
MSH6P52701 AP002991.2-201ENST00000623807 2801 ntBASIC8.25□□□□□ -1.09
MSH6P52701 AL807761.1-201ENST00000417622 171 ntBASIC8.25□□□□□ -1.09
MSH6P52701 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC8.25□□□□□ -1.09
MSH6P52701 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC8.25□□□□□ -1.09
MSH6P52701 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC8.25□□□□□ -1.09
MSH6P52701 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSH6P52701 MGAT2P1-201ENST00000449718 797 ntBASIC8.25□□□□□ -1.09
MSH6P52701 AC104164.1-201ENST00000460282 590 ntBASIC8.25□□□□□ -1.09
MSH6P52701 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC8.25□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms