Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC004263.1-201ENST00000479327 332 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 RN7SL143P-201ENST00000496780 297 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC096754.1-201ENST00000508904 818 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 HPRT1P1-201ENST00000509498 657 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC118465.1-201ENST00000513820 1271 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC079064.1-201ENST00000528365 362 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 OR5BK1P-201ENST00000550421 823 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC025283.1-201ENST00000572039 734 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AL035410.2-201ENST00000604963 864 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AL451064.1-201ENST00000607718 471 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AP003485.2-201ENST00000623636 610 ntBASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
TRIM39Q9HCM9 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.77□□□□□ -1.32
TRIM39Q9HCM9 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
TRIM39Q9HCM9 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AP000866.6-201ENST00000638898 3579 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AL034403.1-201ENST00000399414 885 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 RN7SKP271-201ENST00000410528 320 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 RPSAP60-201ENST00000415403 880 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC017078.1-201ENST00000416146 368 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 DNAJA1P1-201ENST00000425106 1187 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AL035458.1-201ENST00000433096 585 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 RPL7P34-201ENST00000433316 712 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 RN7SL655P-201ENST00000486087 298 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 RN7SL350P-201ENST00000492591 299 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC105420.1-201ENST00000504389 582 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC021220.1-201ENST00000507445 630 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 B3GNTL1P1-201ENST00000509174 289 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 SNX18P23-201ENST00000510867 677 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC093752.1-206ENST00000511823 336 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 OR10J9P-201ENST00000511932 987 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 SNORA31.13-201ENST00000516624 135 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AP006587.5-201ENST00000532033 739 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 OR9G2P-201ENST00000533326 880 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC016144.1-201ENST00000548175 1087 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 FXNP1-201ENST00000555153 337 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 CCDC58P3-201ENST00000590792 430 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 PCNAP1-202ENST00000595299 752 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 U91328.4-201ENST00000608919 517 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC092954.1-201ENST00000609121 445 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AP002782.1-201ENST00000623107 614 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC106782.7-201ENST00000624024 418 ntBASIC6.77□□□□□ -1.33
TRIM39Q9HCM9 AC133555.5-201ENST00000624430 418 ntBASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms