Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.68□□□□□ -1.34
USP39Q53GS9 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
USP39Q53GS9 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.67□□□□□ -1.34
USP39Q53GS9 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
USP39Q53GS9 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 AL390862.1-201ENST00000635467 1469 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
USP39Q53GS9 RNA5SP188-201ENST00000362916 129 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC6.67□□□□□ -1.34
USP39Q53GS9 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 RNU6-891P-201ENST00000384280 111 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 GCNT1P4-201ENST00000404096 329 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 RPS7P12-201ENST00000422385 582 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 RPL7AP14-201ENST00000424041 802 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 NAP1L4P2-201ENST00000425958 899 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC6.67□□□□□ -1.34
USP39Q53GS9 PMS2P9-201ENST00000441237 515 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 GTF2IP14-201ENST00000441415 586 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 RPL5P7-201ENST00000444235 813 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 RN7SL382P-201ENST00000482631 282 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 AC091435.1-201ENST00000505442 584 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC113398.2-201ENST00000507630 558 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC6.67□□□□□ -1.34
USP39Q53GS9 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 RN7SKP98-201ENST00000517070 156 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6.67□□□□□ -1.34
USP39Q53GS9 IGLVIV-66-1-201ENST00000521832 460 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC084824.2-201ENST00000548906 345 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 CTSLP2-201ENST00000580501 394 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC015818.6-201ENST00000584274 634 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 AC026898.1-201ENST00000586404 571 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC080013.3-201ENST00000606839 578 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AL365181.4-201ENST00000609800 547 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC098679.4-201ENST00000624241 654 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC6.67□□□□□ -1.34
USP39Q53GS9 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
USP39Q53GS9 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.67□□□□□ -1.34
USP39Q53GS9 AC005702.3-201ENST00000585345 1447 ntBASIC6.67□□□□□ -1.34
USP39Q53GS9 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
USP39Q53GS9 CR788268.1-201ENST00000603931 1809 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 AC020658.2-201ENST00000559030 4020 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 AC104966.1-201ENST00000467010 1464 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 LCOR-201ENST00000286067 4542 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.66□□□□□ -1.34
USP39Q53GS9 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.66□□□□□ -1.34
USP39Q53GS9 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
USP39Q53GS9 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 RPL11P4-201ENST00000332269 436 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
USP39Q53GS9 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC6.66□□□□□ -1.34
USP39Q53GS9 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 BX119904.4-201ENST00000424402 301 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 AC073508.1-201ENST00000428866 656 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC6.66□□□□□ -1.34
USP39Q53GS9 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC6.66□□□□□ -1.34
USP39Q53GS9 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC6.66□□□□□ -1.34
USP39Q53GS9 AC093720.1-201ENST00000505681 714 ntBASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms