Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC021422.1-201ENST00000621212 473 ntBASIC6.38□□□□□ -1.39
PTPN9P43378 AC009120.7-201ENST00000623452 780 ntBASIC6.38□□□□□ -1.39
PTPN9P43378 AC073488.6-201ENST00000632293 754 ntBASIC6.38□□□□□ -1.39
PTPN9P43378 AC091948.2-201ENST00000636510 279 ntBASIC6.38□□□□□ -1.39
PTPN9P43378 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
PTPN9P43378 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.38□□□□□ -1.39
PTPN9P43378 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC6.38□□□□□ -1.39
PTPN9P43378 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
PTPN9P43378 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
PTPN9P43378 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
PTPN9P43378 AC027279.1-201ENST00000568885 4284 ntBASIC6.38□□□□□ -1.39
PTPN9P43378 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
PTPN9P43378 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC016583.1-201ENST00000624221 2431 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
PTPN9P43378 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 RNU6-819P-201ENST00000364116 107 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 AL121835.1-201ENST00000404250 354 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 RPS7P8-201ENST00000418311 581 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 RPL35AP31-201ENST00000418340 337 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC089999.1-201ENST00000460336 374 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 RN7SL352P-201ENST00000466002 277 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 DEFB109A-201ENST00000482450 265 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AL117692.1-201ENST00000494283 713 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.37□□□□□ -1.39
PTPN9P43378 OR7E99P-201ENST00000505750 922 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC018797.1-201ENST00000510791 255 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.37□□□□□ -1.39
PTPN9P43378 MAST4-IT1-201ENST00000514241 658 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 RN7SKP248-201ENST00000516278 305 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 SNORA70.17-201ENST00000516449 133 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 TPM3P3-201ENST00000521343 354 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AC025423.2-201ENST00000537570 439 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC011270.1-201ENST00000558606 583 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AC002519.2-203ENST00000567043 837 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 MRPS21P8-201ENST00000569196 235 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC119403.2-201ENST00000590960 598 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.37□□□□□ -1.39
PTPN9P43378 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC6.37□□□□□ -1.39
PTPN9P43378 AC022387.2-201ENST00000604050 448 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 KATNBL1P1-201ENST00000605192 748 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 GMCL1P2-201ENST00000605230 823 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.37□□□□□ -1.39
PTPN9P43378 AP003789.1-201ENST00000617737 605 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
PTPN9P43378 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 AC027575.3-201ENST00000583058 2747 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 AL121768.1-201ENST00000613917 2544 ntBASIC6.37□□□□□ -1.39
PTPN9P43378 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.37□□□□□ -1.39
PTPN9P43378 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC6.37□□□□□ -1.39
PTPN9P43378 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
PTPN9P43378 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.36□□□□□ -1.39
PTPN9P43378 AC018628.1-201ENST00000624147 3819 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 AC090181.3-201ENST00000624777 1514 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
PTPN9P43378 AC114876.1-201ENST00000490962 1366 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
PTPN9P43378 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
PTPN9P43378 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.36□□□□□ -1.39
PTPN9P43378 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
PTPN9P43378 RNA5SP375-201ENST00000362975 119 ntBASIC6.36□□□□□ -1.39
PTPN9P43378 RN7SKP171-201ENST00000364417 303 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms