Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RNU6ATAC18P-201ENST00000408413 101 ntBASIC10.18□□□□□ -0.78
CUX2O14529 MRPL53P1-201ENST00000414323 319 ntBASIC10.18□□□□□ -0.78
CUX2O14529 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC10.18□□□□□ -0.78
CUX2O14529 AC104837.2-201ENST00000427236 424 ntBASIC10.18□□□□□ -0.78
CUX2O14529 IGLV3-30-201ENST00000524362 298 ntBASIC10.18□□□□□ -0.78
CUX2O14529 RPA2P3-201ENST00000533268 770 ntBASIC10.18□□□□□ -0.78
CUX2O14529 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC10.18□□□□□ -0.78
CUX2O14529 AL132640.3-201ENST00000630473 177 ntBASIC10.18□□□□□ -0.78
CUX2O14529 LINC01739-205ENST00000641890 573 ntBASIC10.18□□□□□ -0.78
CUX2O14529 HDAC1P2-201ENST00000453661 1398 ntBASIC10.18□□□□□ -0.78
CUX2O14529 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC10.18□□□□□ -0.78
CUX2O14529 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
CUX2O14529 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
CUX2O14529 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
CUX2O14529 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC10.17□□□□□ -0.78
CUX2O14529 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 SNORA70.2-201ENST00000364506 135 ntBASIC10.17□□□□□ -0.78
CUX2O14529 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC10.17□□□□□ -0.78
CUX2O14529 MIR640-201ENST00000385086 96 ntBASIC10.17□□□□□ -0.78
CUX2O14529 AL139415.1-201ENST00000424862 352 ntBASIC10.17□□□□□ -0.78
CUX2O14529 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX2O14529 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX2O14529 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX2O14529 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC10.17□□□□□ -0.78
CUX2O14529 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX2O14529 AC020910.2-201ENST00000603635 610 ntBASIC10.17□□□□□ -0.78
CUX2O14529 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC10.17□□□□□ -0.78
CUX2O14529 AL137067.2-201ENST00000621202 131 ntBASIC10.17□□□□□ -0.78
CUX2O14529 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
CUX2O14529 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC10.17□□□□□ -0.78
CUX2O14529 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC10.17□□□□□ -0.78
CUX2O14529 TEK-202ENST00000406359 3935 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC10.17□□□□□ -0.78
CUX2O14529 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 ZNF733P-202ENST00000444809 1573 ntBASIC10.17□□□□□ -0.78
CUX2O14529 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 AC092821.2-201ENST00000545710 2042 ntBASIC10.17□□□□□ -0.78
CUX2O14529 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC10.17□□□□□ -0.78
CUX2O14529 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX2O14529 CUBNP2-201ENST00000443534 1139 ntBASIC10.17□□□□□ -0.78
CUX2O14529 FRG2FP-204ENST00000453982 852 ntBASIC10.17□□□□□ -0.78
CUX2O14529 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC10.17□□□□□ -0.78
CUX2O14529 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC10.17□□□□□ -0.78
CUX2O14529 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC10.17□□□□□ -0.78
CUX2O14529 AC126177.5-201ENST00000549599 178 ntBASIC10.17□□□□□ -0.78
CUX2O14529 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC10.17□□□□□ -0.78
CUX2O14529 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
CUX2O14529 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC10.16□□□□□ -0.78
CUX2O14529 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 AC114786.1-201ENST00000512892 1415 ntBASIC10.16□□□□□ -0.78
CUX2O14529 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC10.16□□□□□ -0.78
CUX2O14529 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 COL6A4P1-202ENST00000487147 4317 ntBASIC10.16□□□□□ -0.78
CUX2O14529 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
CUX2O14529 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
CUX2O14529 AC087516.1-201ENST00000561236 2428 ntBASIC10.16□□□□□ -0.78
CUX2O14529 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 HNRNPA3P4-201ENST00000427514 803 ntBASIC10.16□□□□□ -0.78
CUX2O14529 CYCSP6-201ENST00000434498 302 ntBASIC10.16□□□□□ -0.78
CUX2O14529 AL035090.1-201ENST00000454835 332 ntBASIC10.16□□□□□ -0.78
CUX2O14529 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC10.16□□□□□ -0.78
CUX2O14529 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC10.16□□□□□ -0.78
CUX2O14529 CCDC58P3-201ENST00000590792 430 ntBASIC10.16□□□□□ -0.78
CUX2O14529 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC10.16□□□□□ -0.78
CUX2O14529 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
CUX2O14529 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms