Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 PRLR-202ENST00000310101 1297 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 HBS1L-202ENST00000367820 638 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 CST13P-201ENST00000376992 428 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 MIR137-201ENST00000385223 102 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 MIR106B-201ENST00000385301 82 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 RPSAP72-201ENST00000407020 358 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 LARP1P1-201ENST00000407692 292 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AKR1B15-201ENST00000423958 1035 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AL954705.1-201ENST00000435277 559 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC231532.1-201ENST00000438584 312 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 LINC00460-203ENST00000444865 739 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 RPL7L1P11-201ENST00000446092 721 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 MIR4422HG-201ENST00000451250 638 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 DNAJC19P1-201ENST00000455312 319 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 RPS7P7-201ENST00000463499 571 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 RPL30P9-201ENST00000465586 330 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AL445187.1-201ENST00000502685 260 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 GAPDHP61-201ENST00000507324 1005 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC109811.2-201ENST00000509609 452 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 DKK2-202ENST00000510463 908 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC023794.3-204ENST00000510754 236 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC110775.1-201ENST00000513721 462 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 LINC01094-206ENST00000514130 594 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC016957.1-201ENST00000534895 309 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AL590560.1-203ENST00000544342 408 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC037479.1-201ENST00000558361 625 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC092757.2-201ENST00000559026 633 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC114546.2-201ENST00000560683 477 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TUBAP4-201ENST00000569261 416 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 PLEKHA3P1-201ENST00000598554 894 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC093765.1-201ENST00000603758 881 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AP000436.1-201ENST00000605239 800 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TATDN1-220ENST00000605953 726 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC024560.3-201ENST00000608482 349 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 MIR6761-201ENST00000617899 72 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC124312.6-202ENST00000623624 418 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AL138924.1-201ENST00000629067 415 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 RPL36AP21-202ENST00000639134 430 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AL008638.3-201ENST00000623027 5182 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 ACSL1-211ENST00000515030 3948 ntAPPRIS P3 TSL 5 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 SLC9B1P3-201ENST00000452667 1334 ntBASIC5.97□□□□□ -1.45
CCDC140Q96MF4 TMEM267-202ENST00000500337 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 ARMC3-203ENST00000409049 2479 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 SLC39A12-204ENST00000539911 2461 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC140Q96MF4 LINC01653-201ENST00000456026 1728 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC140Q96MF4 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC140Q96MF4 OR7E11P-202ENST00000642027 1491 ntBASIC5.96□□□□□ -1.45
CCDC140Q96MF4 SYNPR-204ENST00000460711 2383 ntTSL 2 BASIC5.96□□□□□ -1.45
CCDC140Q96MF4 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC5.96□□□□□ -1.45
CCDC140Q96MF4 PARP2-201ENST00000250416 1886 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC140Q96MF4 PTPN14-205ENST00000543945 3842 ntTSL 5 BASIC5.96□□□□□ -1.45
CCDC140Q96MF4 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC140Q96MF4 PABPC1P9-201ENST00000426076 1612 ntBASIC5.96□□□□□ -1.45
CCDC140Q96MF4 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC5.96□□□□□ -1.45
CCDC140Q96MF4 MAPK10-281ENST00000641170 3070 ntBASIC5.96□□□□□ -1.45
CCDC140Q96MF4 AC003973.3-201ENST00000624863 2822 ntBASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 ZADH2-202ENST00000537114 3205 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 KCNK2-203ENST00000444842 3379 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC140Q96MF4 MEF2C-222ENST00000514028 3393 ntTSL 5 BASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms