Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AL591167.1-201ENST00000607321 456 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC006924.1-201ENST00000610750 559 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AL132875.1-201ENST00000403623 949 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 RNA5SP156-201ENST00000410250 110 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 GTF3AP1-201ENST00000416942 1004 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 GAPDHP75-201ENST00000433910 943 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 LDHAP2-201ENST00000437325 985 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC026348.1-201ENST00000462549 1053 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 CR383658.1-201ENST00000514609 734 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AL121579.2-201ENST00000555466 590 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC007225.2-201ENST00000562529 256 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC009120.7-201ENST00000623452 780 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AL049767.1-202ENST00000637826 242 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 GUCY1B2-204ENST00000531898 1979 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 AC027279.4-201ENST00000624371 2072 ntBASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.25□□□□□ -1.41
HDDC3Q8N4P3 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AL157831.2-201ENST00000564681 3095 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 RNA5SP242-201ENST00000364171 118 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 EEF1B2P8-201ENST00000414101 671 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 UBE2V1P14-201ENST00000415815 558 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 RPL34P27-201ENST00000428810 349 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 CFL1P4-201ENST00000451536 498 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 SNX18P26-201ENST00000458433 740 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 RN7SL717P-201ENST00000478343 297 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 SUMO2P4-201ENST00000504193 276 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AC079600.1-201ENST00000550326 297 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 RPA2P1-201ENST00000556557 721 ntBASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HDDC3Q8N4P3 AC024255.1-201ENST00000614376 102 ntBASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms