Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 MIR541-201ENST00000401360 84 ntBASIC7.87□□□□□ -1.15
LIG1P18858 FABP12P1-201ENST00000401911 322 ntBASIC7.87□□□□□ -1.15
LIG1P18858 NACAP7-201ENST00000407371 609 ntBASIC7.87□□□□□ -1.15
LIG1P18858 SNORA79B-201ENST00000410557 148 ntBASIC7.87□□□□□ -1.15
LIG1P18858 RN7SKP137-201ENST00000411074 307 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC7.87□□□□□ -1.15
LIG1P18858 BTF3L4P1-201ENST00000413813 468 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC7.87□□□□□ -1.15
LIG1P18858 MICG-208ENST00000416822 132 ntBASIC7.87□□□□□ -1.15
LIG1P18858 EIF4A1P2-201ENST00000422633 1220 ntBASIC7.87□□□□□ -1.15
LIG1P18858 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC7.87□□□□□ -1.15
LIG1P18858 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC7.87□□□□□ -1.15
LIG1P18858 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.87□□□□□ -1.15
LIG1P18858 SNRPEP5-201ENST00000425442 278 ntBASIC7.87□□□□□ -1.15
LIG1P18858 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 MRPS21P3-201ENST00000436696 262 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AL592114.2-201ENST00000440142 532 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AC027124.1-201ENST00000440852 466 ntBASIC7.87□□□□□ -1.15
LIG1P18858 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC7.87□□□□□ -1.15
LIG1P18858 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC7.87□□□□□ -1.15
LIG1P18858 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 AC083806.1-201ENST00000468934 316 ntBASIC7.87□□□□□ -1.15
LIG1P18858 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 AL591122.1-201ENST00000487348 492 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC7.87□□□□□ -1.15
LIG1P18858 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC7.87□□□□□ -1.15
LIG1P18858 HMGB1P47-201ENST00000511281 589 ntBASIC7.87□□□□□ -1.15
LIG1P18858 RNA5SP518-201ENST00000515957 119 ntBASIC7.87□□□□□ -1.15
LIG1P18858 SCARNA18.2-201ENST00000516882 84 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC7.87□□□□□ -1.15
LIG1P18858 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC7.87□□□□□ -1.15
LIG1P18858 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
LIG1P18858 AC023080.1-201ENST00000551663 931 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC7.87□□□□□ -1.15
LIG1P18858 AC010735.1-201ENST00000567305 1026 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AC005242.1-201ENST00000585658 438 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC7.87□□□□□ -1.15
LIG1P18858 AC116165.3-201ENST00000614524 400 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AL031667.3-201ENST00000620124 655 ntBASIC7.87□□□□□ -1.15
LIG1P18858 AC073862.4-201ENST00000622982 854 ntBASIC7.87□□□□□ -1.15
LIG1P18858 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC7.87□□□□□ -1.15
LIG1P18858 AC090897.3-201ENST00000636973 1157 ntBASIC7.87□□□□□ -1.15
LIG1P18858 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
LIG1P18858 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
LIG1P18858 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC7.87□□□□□ -1.15
LIG1P18858 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
LIG1P18858 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
LIG1P18858 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 AC096992.2-201ENST00000609553 1684 ntBASIC7.86□□□□□ -1.15
LIG1P18858 AC129502.1-201ENST00000623261 1654 ntBASIC7.86□□□□□ -1.15
LIG1P18858 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC7.86□□□□□ -1.15
LIG1P18858 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 AC130360.2-201ENST00000533477 1556 ntBASIC7.86□□□□□ -1.15
LIG1P18858 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 AMELX-201ENST00000348912 737 ntTSL 5 BASIC7.86□□□□□ -1.15
LIG1P18858 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
LIG1P18858 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
LIG1P18858 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC7.86□□□□□ -1.15
LIG1P18858 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC7.86□□□□□ -1.15
LIG1P18858 Y_RNA.619-201ENST00000410951 90 ntBASIC7.86□□□□□ -1.15
LIG1P18858 OR52N3P-201ENST00000413417 934 ntBASIC7.86□□□□□ -1.15
LIG1P18858 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC7.86□□□□□ -1.15
LIG1P18858 MEAF6P1-201ENST00000416092 327 ntBASIC7.86□□□□□ -1.15
LIG1P18858 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC7.86□□□□□ -1.15
LIG1P18858 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC7.86□□□□□ -1.15
LIG1P18858 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 RPS10P14-201ENST00000440748 502 ntBASIC7.86□□□□□ -1.15
LIG1P18858 RPL7P55-201ENST00000450522 746 ntBASIC7.86□□□□□ -1.15
LIG1P18858 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC7.86□□□□□ -1.15
LIG1P18858 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIG1P18858 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC7.86□□□□□ -1.15
LIG1P18858 RPS3AP22-201ENST00000488297 769 ntBASIC7.86□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms