Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.67□□□□□ -1.5
SDC1P18827 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC5.67□□□□□ -1.5
SDC1P18827 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.67□□□□□ -1.5
SDC1P18827 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.67□□□□□ -1.5
SDC1P18827 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SDC1P18827 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.67□□□□□ -1.5
SDC1P18827 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SDC1P18827 AL078601.3-201ENST00000573303 535 ntBASIC5.67□□□□□ -1.5
SDC1P18827 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.67□□□□□ -1.5
SDC1P18827 AC073333.2-201ENST00000603589 769 ntBASIC5.67□□□□□ -1.5
SDC1P18827 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC5.67□□□□□ -1.5
SDC1P18827 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.67□□□□□ -1.5
SDC1P18827 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.67□□□□□ -1.5
SDC1P18827 AC000095.2-202ENST00000637415 154 ntBASIC5.67□□□□□ -1.5
SDC1P18827 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.67□□□□□ -1.5
SDC1P18827 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
SDC1P18827 MTCO1P28-201ENST00000574177 1528 ntBASIC5.67□□□□□ -1.5
SDC1P18827 HCFC2P1-201ENST00000392864 1592 ntBASIC5.67□□□□□ -1.5
SDC1P18827 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SDC1P18827 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SDC1P18827 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SDC1P18827 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.66□□□□□ -1.5
SDC1P18827 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 AC093297.3-201ENST00000607056 2517 ntBASIC5.66□□□□□ -1.5
SDC1P18827 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SDC1P18827 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SDC1P18827 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.66□□□□□ -1.5
SDC1P18827 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 Z82198.3-201ENST00000421145 199 ntBASIC5.66□□□□□ -1.5
SDC1P18827 RPSAP32-201ENST00000432681 526 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AC023141.3-201ENST00000436698 278 ntBASIC5.66□□□□□ -1.5
SDC1P18827 RPS7P3-201ENST00000443360 580 ntBASIC5.66□□□□□ -1.5
SDC1P18827 TRIM60P16-201ENST00000444048 694 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.66□□□□□ -1.5
SDC1P18827 FRG2FP-204ENST00000453982 852 ntBASIC5.66□□□□□ -1.5
SDC1P18827 PPIAP7-201ENST00000454070 489 ntBASIC5.66□□□□□ -1.5
SDC1P18827 CEACAMP11-201ENST00000455211 583 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC5.66□□□□□ -1.5
SDC1P18827 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 AC079080.1-201ENST00000479841 822 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AC005017.1-201ENST00000482002 490 ntBASIC5.66□□□□□ -1.5
SDC1P18827 RPL29P23-201ENST00000486188 442 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AC090058.1-201ENST00000498788 435 ntBASIC5.66□□□□□ -1.5
SDC1P18827 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 OR7E99P-201ENST00000505750 922 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AC111000.5-201ENST00000506559 1178 ntBASIC5.66□□□□□ -1.5
SDC1P18827 RNA5SP441-201ENST00000516809 88 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AC078899.1-201ENST00000521432 1185 ntBASIC5.66□□□□□ -1.5
SDC1P18827 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.66□□□□□ -1.5
SDC1P18827 AC110056.1-201ENST00000525759 911 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AP000620.1-201ENST00000527147 504 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.66□□□□□ -1.5
SDC1P18827 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.66□□□□□ -1.5
SDC1P18827 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SDC1P18827 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.66□□□□□ -1.5
SDC1P18827 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.66□□□□□ -1.5
SDC1P18827 AC069542.2-201ENST00000624816 216 ntBASIC5.66□□□□□ -1.5
SDC1P18827 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.66□□□□□ -1.5
SDC1P18827 AC073488.6-201ENST00000632293 754 ntBASIC5.66□□□□□ -1.5
SDC1P18827 AC009950.2-201ENST00000636548 183 ntBASIC5.66□□□□□ -1.5
SDC1P18827 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SDC1P18827 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.66□□□□□ -1.5
SDC1P18827 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SDC1P18827 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SDC1P18827 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SDC1P18827 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
SDC1P18827 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.65□□□□□ -1.5
SDC1P18827 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SDC1P18827 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SDC1P18827 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SDC1P18827 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.5
SDC1P18827 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SDC1P18827 MAPK10-261ENST00000641050 3109 ntBASIC5.65□□□□□ -1.5
SDC1P18827 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SDC1P18827 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
SDC1P18827 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC5.65□□□□□ -1.5
SDC1P18827 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms