Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC7.76□□□□□ -1.17
HMGB1P09429 MBD5-221ENST00000637159 902 ntTSL 5 BASIC7.76□□□□□ -1.17
HMGB1P09429 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC7.76□□□□□ -1.17
HMGB1P09429 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
HMGB1P09429 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC7.76□□□□□ -1.17
HMGB1P09429 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 AL591848.4-201ENST00000567832 3472 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 KYNUP2-201ENST00000582280 1329 ntBASIC7.76□□□□□ -1.17
HMGB1P09429 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
HMGB1P09429 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC7.76□□□□□ -1.17
HMGB1P09429 Z95114.1-201ENST00000624264 14574 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 LRRC37A12P-201ENST00000454917 1801 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC7.75□□□□□ -1.17
HMGB1P09429 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 MRPL47-201ENST00000259038 1126 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
HMGB1P09429 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
HMGB1P09429 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC7.75□□□□□ -1.17
HMGB1P09429 AL356057.1-202ENST00000402263 756 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 AL353133.1-201ENST00000407695 401 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 MORN2-202ENST00000409077 465 ntTSL 5 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC048351.1-201ENST00000420064 602 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 RPL23AP85-201ENST00000421838 433 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 VN1R53P-201ENST00000429536 957 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 XKRY2-201ENST00000442362 1093 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC7.75□□□□□ -1.17
HMGB1P09429 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC7.75□□□□□ -1.17
HMGB1P09429 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC7.75□□□□□ -1.17
HMGB1P09429 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC7.75□□□□□ -1.17
HMGB1P09429 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC7.75□□□□□ -1.17
HMGB1P09429 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC7.75□□□□□ -1.17
HMGB1P09429 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC073488.9-201ENST00000631601 754 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC112243.1-201ENST00000623949 3851 ntBASIC7.75□□□□□ -1.17
HMGB1P09429 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
HMGB1P09429 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC7.75□□□□□ -1.17
HMGB1P09429 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC7.75□□□□□ -1.17
HMGB1P09429 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC7.75□□□□□ -1.17
HMGB1P09429 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
HMGB1P09429 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
HMGB1P09429 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.75□□□□□ -1.17
HMGB1P09429 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC7.75□□□□□ -1.17
HMGB1P09429 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
HMGB1P09429 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
HMGB1P09429 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
HMGB1P09429 AC011455.2-201ENST00000599320 3336 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
HMGB1P09429 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
HMGB1P09429 AC010894.1-201ENST00000313760 361 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
HMGB1P09429 RNU1-5P-201ENST00000362684 144 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 RNA5SP442-201ENST00000365050 107 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 RPL5P20-201ENST00000403848 896 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 NCSTNP1-201ENST00000406229 144 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 RANP6-201ENST00000413691 644 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC7.74□□□□□ -1.17
HMGB1P09429 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC7.74□□□□□ -1.17
HMGB1P09429 MTND4P24-201ENST00000424002 397 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AL589794.1-201ENST00000424971 390 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 TRAPPC2P5-201ENST00000426293 308 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 FAR1P1-201ENST00000427163 934 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC099063.2-201ENST00000446360 662 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AKR1D1P1-201ENST00000457236 936 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 RPSAP24-201ENST00000461543 873 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 RN7SL70P-201ENST00000478322 302 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 RPL34P33-201ENST00000486062 334 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 RN7SL655P-201ENST00000486087 298 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 RPL24-206ENST00000495401 478 ntTSL 2 BASIC7.74□□□□□ -1.17
HMGB1P09429 RPL19P11-201ENST00000495944 589 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 CSNK1A1P3-201ENST00000504105 330 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 AC091965.3-201ENST00000506236 208 ntBASIC7.74□□□□□ -1.17
HMGB1P09429 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC7.74□□□□□ -1.17
HMGB1P09429 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC7.74□□□□□ -1.17
HMGB1P09429 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC7.74□□□□□ -1.17
HMGB1P09429 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC7.74□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms