Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC010894.1-201ENST00000313760 361 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC003045.1-201ENST00000398779 713 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 UBTFL2-201ENST00000411859 1191 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 RPS7P14-201ENST00000426405 583 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 RANP2-201ENST00000456833 229 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 SEPT7P6-201ENST00000469999 1143 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 RN7SL649P-201ENST00000496974 275 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 RNA5SP418-201ENST00000515951 117 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC037479.1-201ENST00000558361 625 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC020916.2-201ENST00000591242 360 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.36□□□□□ -1.55
NKX3-1Q99801 MIR7159-201ENST00000620587 66 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 AL121839.2-201ENST00000565058 6943 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 AC217777.1-201ENST00000570034 1471 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.36□□□□□ -1.55
NKX3-1Q99801 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 OR4G1P-202ENST00000641173 1788 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 SMG1P5-202ENST00000529428 4219 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 SMG1P2-201ENST00000566127 4221 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 RNU4-23P-201ENST00000362839 140 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 RNU1-59P-201ENST00000364829 162 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 RN7SKP151-201ENST00000410230 316 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 RPS26P38-201ENST00000414476 348 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC017078.1-201ENST00000416146 368 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 FAM183DP-201ENST00000421987 399 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AL645939.3-201ENST00000435408 225 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 XKRYP6-201ENST00000440468 1116 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 COL11A2P1-205ENST00000441798 676 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 BTBD7P2-201ENST00000441962 620 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 XKRYP3-201ENST00000442113 1116 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC016908.1-201ENST00000442571 1219 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 RPS7P10-201ENST00000464254 603 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 RN7SL741P-201ENST00000482473 289 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 RN7SL413P-201ENST00000482700 297 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC114324.2-202ENST00000503812 134 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 MTND2P31-201ENST00000512602 616 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 RN7SKP67-201ENST00000515905 235 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC009729.1-201ENST00000548873 1133 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms