Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PDCL3P4-201ENST00000489621 720 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 RN7SL284P-201ENST00000498823 275 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 AC090424.1-201ENST00000535243 736 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 BMS1P16-201ENST00000556075 1147 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 AC005632.2-201ENST00000564271 828 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 AL163952.1-202ENST00000569625 600 ntBASIC6.41□□□□□ -1.38
CCDC42Q96M95 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC42Q96M95 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
CCDC42Q96M95 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 PRELID1P1-201ENST00000403549 660 ntBASIC6.4□□□□□ -1.38
CCDC42Q96M95 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC096632.2-201ENST00000438139 1239 ntBASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC009963.4-201ENST00000448535 339 ntBASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC122714.1-201ENST00000502510 459 ntBASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC090774.2-201ENST00000584708 322 ntBASIC6.4□□□□□ -1.38
CCDC42Q96M95 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 GAPDHP41-201ENST00000613707 975 ntBASIC6.4□□□□□ -1.38
CCDC42Q96M95 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC42Q96M95 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC42Q96M95 AL355488.2-201ENST00000609909 2850 ntBASIC6.4□□□□□ -1.38
CCDC42Q96M95 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC42Q96M95 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC42Q96M95 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC42Q96M95 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC42Q96M95 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC42Q96M95 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
CCDC42Q96M95 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC42Q96M95 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 RNA5SP211-201ENST00000365516 117 ntBASIC6.39□□□□□ -1.39
CCDC42Q96M95 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 RPL11P3-201ENST00000395256 523 ntBASIC6.39□□□□□ -1.39
CCDC42Q96M95 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 AL139805.1-201ENST00000407837 289 ntBASIC6.39□□□□□ -1.39
CCDC42Q96M95 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 AC099677.3-201ENST00000427081 395 ntBASIC6.39□□□□□ -1.39
CCDC42Q96M95 CRIP1P1-201ENST00000427567 185 ntBASIC6.39□□□□□ -1.39
CCDC42Q96M95 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC42Q96M95 GAPDHP19-201ENST00000431768 1005 ntBASIC6.39□□□□□ -1.39
CCDC42Q96M95 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 SEPT14P12-201ENST00000442280 560 ntBASIC6.39□□□□□ -1.39
CCDC42Q96M95 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC42Q96M95 RPL12P39-201ENST00000455456 496 ntBASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms