Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AP006437.1-202ENST00000530327 933 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.45□□□□□ -1.7
FOXA3P55318 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC4.45□□□□□ -1.7
FOXA3P55318 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.45□□□□□ -1.7
FOXA3P55318 AC005519.1-201ENST00000554490 601 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC4.45□□□□□ -1.7
FOXA3P55318 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC4.45□□□□□ -1.7
FOXA3P55318 SYPL1P2-201ENST00000582878 727 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC4.45□□□□□ -1.7
FOXA3P55318 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC4.45□□□□□ -1.7
FOXA3P55318 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.45□□□□□ -1.7
FOXA3P55318 AL513327.3-201ENST00000602618 469 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 NDUFB9P1-201ENST00000604683 510 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 AC008555.7-201ENST00000605008 583 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 NANOGP3-201ENST00000605855 286 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC4.45□□□□□ -1.7
FOXA3P55318 Z95327.3-201ENST00000610385 572 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 AL137000.1-201ENST00000610528 1244 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA3P55318 KDM5DP1-201ENST00000622542 298 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
FOXA3P55318 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA3P55318 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC4.45□□□□□ -1.7
FOXA3P55318 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.45□□□□□ -1.7
FOXA3P55318 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.45□□□□□ -1.7
FOXA3P55318 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA3P55318 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA3P55318 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
FOXA3P55318 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA3P55318 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA3P55318 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
FOXA3P55318 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
FOXA3P55318 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA3P55318 AC116158.1-201ENST00000560231 2129 ntBASIC4.45□□□□□ -1.7
FOXA3P55318 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.45□□□□□ -1.7
FOXA3P55318 AC026523.2-201ENST00000625039 7739 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 PROS2P-201ENST00000474651 1951 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA3P55318 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA3P55318 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 RNU105B-201ENST00000364478 208 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 RNA5SP427-201ENST00000365323 119 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
FOXA3P55318 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 RN7SKP121-201ENST00000410842 305 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 RN7SKP30-201ENST00000411373 334 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 AC079809.1-201ENST00000415468 276 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 RNGTTP1-201ENST00000420965 728 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 OR52S1P-201ENST00000427016 937 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 HMGN2P27-201ENST00000427352 270 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 TRBV29OR9-2-201ENST00000427589 333 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC242426.1-201ENST00000435270 960 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC096775.1-201ENST00000437724 448 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 COL11A2P1-205ENST00000441798 676 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 RPS10P18-201ENST00000442662 495 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 AL603882.1-201ENST00000463059 681 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 RN7SL369P-201ENST00000477138 299 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC106760.2-201ENST00000504159 619 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AC137549.1-201ENST00000514243 533 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 RNA5SP230-201ENST00000517039 122 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC090424.1-201ENST00000535243 736 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC4.44□□□□□ -1.7
FOXA3P55318 MIR4312-201ENST00000579909 76 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 RPL29P33-201ENST00000587474 316 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AC090241.1-201ENST00000587732 621 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA3P55318 AL591167.1-201ENST00000607321 456 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 AC026333.4-201ENST00000613543 544 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA3P55318 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 AC073869.7-201ENST00000640874 297 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms