Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 AC011455.2-201ENST00000599320 3336 ntBASIC6.72□□□□□ -1.33
BDNFP23560 VPS35P1-201ENST00000563400 1518 ntBASIC6.72□□□□□ -1.33
BDNFP23560 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC6.72□□□□□ -1.33
BDNFP23560 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 RNU6-249P-201ENST00000363016 102 ntBASIC6.72□□□□□ -1.33
BDNFP23560 RN7SKP237-201ENST00000364663 301 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.72□□□□□ -1.33
BDNFP23560 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 OR5W1P-201ENST00000423705 938 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC093084.1-201ENST00000424233 687 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC092865.3-201ENST00000425390 1026 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC097523.2-201ENST00000435551 652 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.72□□□□□ -1.33
BDNFP23560 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.72□□□□□ -1.33
BDNFP23560 AL645936.1-201ENST00000441979 518 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
BDNFP23560 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.72□□□□□ -1.33
BDNFP23560 BUD31P2-201ENST00000449374 300 ntBASIC6.72□□□□□ -1.33
BDNFP23560 HSPE1P22-201ENST00000456856 327 ntBASIC6.72□□□□□ -1.33
BDNFP23560 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.72□□□□□ -1.33
BDNFP23560 AC096754.1-201ENST00000508904 818 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC106800.3-201ENST00000511389 308 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC6.72□□□□□ -1.33
BDNFP23560 HSD3BP3-201ENST00000514706 994 ntBASIC6.72□□□□□ -1.33
BDNFP23560 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 IGKV1D-22-201ENST00000518953 324 ntBASIC6.72□□□□□ -1.33
BDNFP23560 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.72□□□□□ -1.33
BDNFP23560 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.72□□□□□ -1.33
BDNFP23560 MIR4502-201ENST00000580432 81 ntBASIC6.72□□□□□ -1.33
BDNFP23560 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC012213.4-201ENST00000606457 354 ntBASIC6.72□□□□□ -1.33
BDNFP23560 SNORA74.4-201ENST00000607595 199 ntBASIC6.72□□□□□ -1.33
BDNFP23560 AC004241.3-201ENST00000611728 517 ntBASIC6.72□□□□□ -1.33
BDNFP23560 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.72□□□□□ -1.33
BDNFP23560 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
BDNFP23560 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BDNFP23560 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.72□□□□□ -1.33
BDNFP23560 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
BDNFP23560 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.71□□□□□ -1.33
BDNFP23560 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
BDNFP23560 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
BDNFP23560 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
BDNFP23560 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
BDNFP23560 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.33
BDNFP23560 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
BDNFP23560 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.71□□□□□ -1.33
BDNFP23560 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.71□□□□□ -1.33
BDNFP23560 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.71□□□□□ -1.33
BDNFP23560 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.71□□□□□ -1.34
BDNFP23560 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
BDNFP23560 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC6.71□□□□□ -1.34
BDNFP23560 MIR621-201ENST00000384919 96 ntBASIC6.71□□□□□ -1.34
BDNFP23560 SNORD65-201ENST00000391079 73 ntBASIC6.71□□□□□ -1.34
BDNFP23560 GCNT1P4-201ENST00000404096 329 ntBASIC6.71□□□□□ -1.34
BDNFP23560 AL139805.1-201ENST00000407837 289 ntBASIC6.71□□□□□ -1.34
BDNFP23560 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.71□□□□□ -1.34
BDNFP23560 GLUD1P9-201ENST00000420997 1173 ntBASIC6.71□□□□□ -1.34
BDNFP23560 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.71□□□□□ -1.34
BDNFP23560 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC6.71□□□□□ -1.34
BDNFP23560 RPSAP40-201ENST00000442343 891 ntBASIC6.71□□□□□ -1.34
BDNFP23560 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.71□□□□□ -1.34
BDNFP23560 AL157385.1-201ENST00000446973 268 ntBASIC6.71□□□□□ -1.34
BDNFP23560 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.71□□□□□ -1.34
BDNFP23560 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.71□□□□□ -1.34
BDNFP23560 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.71□□□□□ -1.34
BDNFP23560 OR52A4P-203ENST00000498233 1014 ntBASIC6.71□□□□□ -1.34
BDNFP23560 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.71□□□□□ -1.34
BDNFP23560 AC108103.1-201ENST00000511286 446 ntBASIC6.71□□□□□ -1.34
BDNFP23560 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC6.71□□□□□ -1.34
BDNFP23560 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC6.71□□□□□ -1.34
BDNFP23560 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC6.71□□□□□ -1.34
BDNFP23560 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.71□□□□□ -1.34
BDNFP23560 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.71□□□□□ -1.34
BDNFP23560 AC091167.5-201ENST00000605689 894 ntBASIC6.71□□□□□ -1.34
BDNFP23560 AL008723.3-201ENST00000608926 449 ntBASIC6.71□□□□□ -1.34
BDNFP23560 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 AC232271.1-201ENST00000602455 2715 ntBASIC6.71□□□□□ -1.34
BDNFP23560 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.71□□□□□ -1.34
BDNFP23560 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.34
BDNFP23560 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
BDNFP23560 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.71□□□□□ -1.34
BDNFP23560 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.71□□□□□ -1.34
BDNFP23560 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
BDNFP23560 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms