Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.11□□□□□ -1.43
MSH3P20585 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.11□□□□□ -1.43
MSH3P20585 NME1P1-201ENST00000420914 382 ntBASIC6.11□□□□□ -1.43
MSH3P20585 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.11□□□□□ -1.43
MSH3P20585 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.11□□□□□ -1.43
MSH3P20585 RPS27AP3-201ENST00000453803 454 ntBASIC6.11□□□□□ -1.43
MSH3P20585 AC073594.1-201ENST00000462065 364 ntBASIC6.11□□□□□ -1.43
MSH3P20585 AL355032.1-201ENST00000472981 438 ntBASIC6.11□□□□□ -1.43
MSH3P20585 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSH3P20585 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.11□□□□□ -1.43
MSH3P20585 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.11□□□□□ -1.43
MSH3P20585 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.11□□□□□ -1.43
MSH3P20585 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.11□□□□□ -1.43
MSH3P20585 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC6.11□□□□□ -1.43
MSH3P20585 OR1E3-201ENST00000575608 948 ntBASIC6.11□□□□□ -1.43
MSH3P20585 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.11□□□□□ -1.43
MSH3P20585 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.11□□□□□ -1.43
MSH3P20585 AC008555.7-201ENST00000605008 583 ntBASIC6.11□□□□□ -1.43
MSH3P20585 AL080312.2-201ENST00000613001 630 ntBASIC6.11□□□□□ -1.43
MSH3P20585 U1.25-201ENST00000614085 162 ntBASIC6.11□□□□□ -1.43
MSH3P20585 RFPL4AP6-201ENST00000616792 846 ntBASIC6.11□□□□□ -1.43
MSH3P20585 U1.34-201ENST00000618578 162 ntBASIC6.11□□□□□ -1.43
MSH3P20585 U1.31-201ENST00000620022 160 ntBASIC6.11□□□□□ -1.43
MSH3P20585 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.11□□□□□ -1.43
MSH3P20585 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSH3P20585 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSH3P20585 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.11□□□□□ -1.43
MSH3P20585 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
MSH3P20585 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSH3P20585 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSH3P20585 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.11□□□□□ -1.43
MSH3P20585 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
MSH3P20585 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.11□□□□□ -1.43
MSH3P20585 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSH3P20585 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
MSH3P20585 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
MSH3P20585 AC018717.1-201ENST00000457712 1505 ntBASIC6.1□□□□□ -1.43
MSH3P20585 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
MSH3P20585 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 GCNT1P4-201ENST00000404096 329 ntBASIC6.1□□□□□ -1.43
MSH3P20585 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.1□□□□□ -1.43
MSH3P20585 RN7SKP108-201ENST00000411367 328 ntBASIC6.1□□□□□ -1.43
MSH3P20585 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.1□□□□□ -1.43
MSH3P20585 AL354707.3-201ENST00000427308 331 ntBASIC6.1□□□□□ -1.43
MSH3P20585 RPL5P7-201ENST00000444235 813 ntBASIC6.1□□□□□ -1.43
MSH3P20585 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.1□□□□□ -1.43
MSH3P20585 AC104339.1-201ENST00000465478 348 ntBASIC6.1□□□□□ -1.43
MSH3P20585 AC091874.2-201ENST00000505889 720 ntBASIC6.1□□□□□ -1.43
MSH3P20585 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC6.1□□□□□ -1.43
MSH3P20585 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.1□□□□□ -1.43
MSH3P20585 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.1□□□□□ -1.43
MSH3P20585 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.1□□□□□ -1.43
MSH3P20585 MEG8-217ENST00000556637 924 ntTSL 5 BASIC6.1□□□□□ -1.43
MSH3P20585 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.1□□□□□ -1.43
MSH3P20585 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.1□□□□□ -1.43
MSH3P20585 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC6.1□□□□□ -1.43
MSH3P20585 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC6.1□□□□□ -1.43
MSH3P20585 AC073389.3-201ENST00000609434 935 ntBASIC6.1□□□□□ -1.43
MSH3P20585 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.1□□□□□ -1.43
MSH3P20585 MIR7109-201ENST00000613748 65 ntBASIC6.1□□□□□ -1.43
MSH3P20585 AC020658.4-201ENST00000613987 684 ntBASIC6.1□□□□□ -1.43
MSH3P20585 FAM27E2-201ENST00000619668 403 ntBASIC6.1□□□□□ -1.43
MSH3P20585 AL591926.1-201ENST00000620542 217 ntBASIC6.1□□□□□ -1.43
MSH3P20585 AL137067.2-201ENST00000621202 131 ntBASIC6.1□□□□□ -1.43
MSH3P20585 AC009120.7-201ENST00000623452 780 ntBASIC6.1□□□□□ -1.43
MSH3P20585 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
MSH3P20585 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.1□□□□□ -1.43
MSH3P20585 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.1□□□□□ -1.43
MSH3P20585 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
MSH3P20585 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
MSH3P20585 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.09□□□□□ -1.43
MSH3P20585 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.09□□□□□ -1.43
MSH3P20585 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
MSH3P20585 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSH3P20585 SAMMSON-210ENST00000641260 1308 ntBASIC6.09□□□□□ -1.43
MSH3P20585 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.09□□□□□ -1.43
MSH3P20585 AC024587.1-201ENST00000505925 2157 ntBASIC6.09□□□□□ -1.43
MSH3P20585 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.09□□□□□ -1.43
MSH3P20585 AC011416.1-201ENST00000514947 1732 ntBASIC6.09□□□□□ -1.43
MSH3P20585 Z95114.1-201ENST00000624264 14574 ntBASIC6.09□□□□□ -1.43
MSH3P20585 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.09□□□□□ -1.43
MSH3P20585 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC6.09□□□□□ -1.43
MSH3P20585 RNU1-65P-201ENST00000363919 148 ntBASIC6.09□□□□□ -1.43
MSH3P20585 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.09□□□□□ -1.43
MSH3P20585 RPL23AP17-201ENST00000401064 499 ntBASIC6.09□□□□□ -1.43
MSH3P20585 AL121835.1-201ENST00000404250 354 ntBASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms