Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
SPTA1P02549 RNU105B-201ENST00000364478 208 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 RN7SKP27-201ENST00000410684 333 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.56□□□□□ -1.52
SPTA1P02549 RPL26P29-201ENST00000415623 438 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC5.56□□□□□ -1.52
SPTA1P02549 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC5.56□□□□□ -1.52
SPTA1P02549 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.56□□□□□ -1.52
SPTA1P02549 AC027026.1-201ENST00000532323 742 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.56□□□□□ -1.52
SPTA1P02549 AC137768.1-201ENST00000549998 553 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.56□□□□□ -1.52
SPTA1P02549 RN7SL708P-201ENST00000580952 299 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 MIR4505-201ENST00000582238 73 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 AC010976.1-205ENST00000596439 1007 ntTSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 AC007683.2-201ENST00000624681 714 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC5.56□□□□□ -1.52
SPTA1P02549 AC026951.1-201ENST00000559530 2459 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 AC022325.1-201ENST00000502748 2199 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.56□□□□□ -1.52
SPTA1P02549 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SPTA1P02549 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 AK4P4-201ENST00000419465 646 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC5.56□□□□□ -1.52
SPTA1P02549 CYP4F29P-201ENST00000420685 446 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.56□□□□□ -1.52
SPTA1P02549 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 AC024558.1-201ENST00000505008 528 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 AC074087.1-201ENST00000512059 724 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 AC009120.3-201ENST00000563335 499 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 MIR1254-2-201ENST00000579553 63 ntBASIC5.56□□□□□ -1.52
SPTA1P02549 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
SPTA1P02549 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
SPTA1P02549 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SPTA1P02549 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.55□□□□□ -1.52
SPTA1P02549 PABPC1P6-201ENST00000445594 1829 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AL161756.3-201ENST00000641216 2071 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
SPTA1P02549 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC5.55□□□□□ -1.52
SPTA1P02549 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SPTA1P02549 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.55□□□□□ -1.52
SPTA1P02549 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC5.55□□□□□ -1.52
SPTA1P02549 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.55□□□□□ -1.52
SPTA1P02549 AC092647.3-201ENST00000443044 633 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.55□□□□□ -1.52
SPTA1P02549 RN7SL193P-201ENST00000491708 276 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AC008953.1-201ENST00000497334 318 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
SPTA1P02549 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC5.55□□□□□ -1.52
SPTA1P02549 AL691477.1-201ENST00000624398 162 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.55□□□□□ -1.52
SPTA1P02549 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.55□□□□□ -1.52
SPTA1P02549 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.55□□□□□ -1.52
SPTA1P02549 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 AP002833.3-201ENST00000625075 2265 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AL157831.2-201ENST00000564681 3095 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SPTA1P02549 RN7SKP124-201ENST00000364730 341 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 SNORA43.1-201ENST00000364863 140 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 RNU1-46P-201ENST00000384425 164 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AL132875.1-201ENST00000403623 949 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AC005532.2-201ENST00000467154 373 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AC117395.1-201ENST00000487390 403 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 PRELID3BP5-201ENST00000508612 460 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 RAB9BP1-201ENST00000519581 626 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.55□□□□□ -1.52
SPTA1P02549 AP000662.1-201ENST00000530952 487 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC5.55□□□□□ -1.52
SPTA1P02549 DPPA2P4-201ENST00000563717 878 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.55□□□□□ -1.52
SPTA1P02549 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.55□□□□□ -1.52
SPTA1P02549 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.55□□□□□ -1.52
SPTA1P02549 AL445222.1-201ENST00000607259 628 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 AL034417.4-202ENST00000642135 2236 ntBASIC5.55□□□□□ -1.52
SPTA1P02549 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms