Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC7.44□□□□□ -1.22
LIG3P49916 RPS7P9-201ENST00000414704 586 ntBASIC7.44□□□□□ -1.22
LIG3P49916 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG3P49916 FTOP1-201ENST00000419363 861 ntBASIC7.44□□□□□ -1.22
LIG3P49916 AC009495.3-201ENST00000425688 779 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG3P49916 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG3P49916 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 CUBNP2-201ENST00000443534 1139 ntBASIC7.44□□□□□ -1.22
LIG3P49916 HSFY3P-201ENST00000444242 1191 ntBASIC7.44□□□□□ -1.22
LIG3P49916 AC244505.3-201ENST00000454598 187 ntBASIC7.44□□□□□ -1.22
LIG3P49916 OR2AF1P-201ENST00000454899 889 ntBASIC7.44□□□□□ -1.22
LIG3P49916 AL133477.1-201ENST00000457472 514 ntBASIC7.44□□□□□ -1.22
LIG3P49916 AC092754.2-201ENST00000463506 460 ntBASIC7.44□□□□□ -1.22
LIG3P49916 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC7.44□□□□□ -1.22
LIG3P49916 RN7SL688P-201ENST00000471754 275 ntBASIC7.44□□□□□ -1.22
LIG3P49916 DPH5-211ENST00000488176 1034 ntAPPRIS P4 TSL 3 BASIC7.44□□□□□ -1.22
LIG3P49916 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG3P49916 AC008040.4-201ENST00000494834 768 ntBASIC7.44□□□□□ -1.22
LIG3P49916 AC106760.2-201ENST00000504159 619 ntBASIC7.44□□□□□ -1.22
LIG3P49916 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC7.44□□□□□ -1.22
LIG3P49916 AC016559.1-201ENST00000511420 199 ntBASIC7.44□□□□□ -1.22
LIG3P49916 IGKV2-29-201ENST00000521304 372 ntBASIC7.44□□□□□ -1.22
LIG3P49916 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG3P49916 RFPL1S-203ENST00000539579 330 ntBASIC7.44□□□□□ -1.22
LIG3P49916 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC7.44□□□□□ -1.22
LIG3P49916 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC7.44□□□□□ -1.22
LIG3P49916 EXOSC3P2-201ENST00000594464 497 ntBASIC7.44□□□□□ -1.22
LIG3P49916 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC7.44□□□□□ -1.22
LIG3P49916 AL589765.5-201ENST00000596133 515 ntBASIC7.44□□□□□ -1.22
LIG3P49916 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC7.44□□□□□ -1.22
LIG3P49916 AP005329.3-201ENST00000609924 686 ntBASIC7.44□□□□□ -1.22
LIG3P49916 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 ENSA-215ENST00000638926 360 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 ZNF121-201ENST00000320451 1563 ntAPPRIS P1 TSL 3 BASIC7.44□□□□□ -1.22
LIG3P49916 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC7.44□□□□□ -1.22
LIG3P49916 AL355377.1-201ENST00000621125 1653 ntBASIC7.44□□□□□ -1.22
LIG3P49916 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC7.44□□□□□ -1.22
LIG3P49916 AC007342.7-201ENST00000624610 2337 ntBASIC7.44□□□□□ -1.22
LIG3P49916 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.44□□□□□ -1.22
LIG3P49916 AC093536.2-201ENST00000565257 1406 ntBASIC7.44□□□□□ -1.22
LIG3P49916 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC7.43□□□□□ -1.22
LIG3P49916 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 AC019178.1-201ENST00000392337 440 ntBASIC7.43□□□□□ -1.22
LIG3P49916 RNU4-64P-201ENST00000410795 131 ntBASIC7.43□□□□□ -1.22
LIG3P49916 BTF3P8-201ENST00000414577 526 ntBASIC7.43□□□□□ -1.22
LIG3P49916 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC7.43□□□□□ -1.22
LIG3P49916 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC7.43□□□□□ -1.22
LIG3P49916 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC7.43□□□□□ -1.22
LIG3P49916 ZDHHC20P2-201ENST00000424108 429 ntBASIC7.43□□□□□ -1.22
LIG3P49916 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC7.43□□□□□ -1.22
LIG3P49916 HIGD1AP12-201ENST00000427832 281 ntBASIC7.43□□□□□ -1.22
LIG3P49916 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC7.43□□□□□ -1.22
LIG3P49916 AC244505.2-201ENST00000435089 759 ntBASIC7.43□□□□□ -1.22
LIG3P49916 MTND1P27-201ENST00000451117 902 ntBASIC7.43□□□□□ -1.22
LIG3P49916 HNRNPDLP2-201ENST00000455248 751 ntBASIC7.43□□□□□ -1.22
LIG3P49916 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 AC074386.1-206ENST00000487102 761 ntBASIC7.43□□□□□ -1.22
LIG3P49916 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC7.43□□□□□ -1.22
LIG3P49916 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC7.43□□□□□ -1.22
LIG3P49916 MTCYBP37-201ENST00000510642 1133 ntBASIC7.43□□□□□ -1.22
LIG3P49916 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC7.43□□□□□ -1.22
LIG3P49916 AC119751.1-201ENST00000513357 765 ntBASIC7.43□□□□□ -1.22
LIG3P49916 AC008494.2-201ENST00000514544 370 ntBASIC7.43□□□□□ -1.22
LIG3P49916 TMEM97P2-201ENST00000517841 403 ntBASIC7.43□□□□□ -1.22
LIG3P49916 AP001994.1-201ENST00000527539 826 ntBASIC7.43□□□□□ -1.22
LIG3P49916 OR6M3P-201ENST00000531567 700 ntBASIC7.43□□□□□ -1.22
LIG3P49916 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC7.43□□□□□ -1.22
LIG3P49916 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC7.43□□□□□ -1.22
LIG3P49916 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 GNG2-208ENST00000554875 430 ntTSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC7.43□□□□□ -1.22
LIG3P49916 DPRXP4-201ENST00000578053 568 ntBASIC7.43□□□□□ -1.22
LIG3P49916 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC7.43□□□□□ -1.22
LIG3P49916 ZNF208-202ENST00000597040 781 ntTSL 2 BASIC7.43□□□□□ -1.22
LIG3P49916 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 AC024451.4-201ENST00000602578 752 ntBASIC7.43□□□□□ -1.22
LIG3P49916 OR2AS2P-201ENST00000606902 342 ntBASIC7.43□□□□□ -1.22
LIG3P49916 FRG2MP-201ENST00000613317 856 ntBASIC7.43□□□□□ -1.22
LIG3P49916 AL354976.1-201ENST00000613843 387 ntBASIC7.43□□□□□ -1.22
LIG3P49916 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 AC015660.5-201ENST00000623238 564 ntBASIC7.43□□□□□ -1.22
LIG3P49916 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC7.43□□□□□ -1.22
LIG3P49916 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC7.43□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms