Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC008494.2-201ENST00000514544 370 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXA3O43365 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXA3O43365 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXA3O43365 PDCL2P2-201ENST00000533651 189 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXA3O43365 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXA3O43365 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXA3O43365 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXA3O43365 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXA3O43365 AC022662.1-201ENST00000580252 331 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXA3O43365 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXA3O43365 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 NDUFB9P1-201ENST00000604683 510 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXA3O43365 AL353600.1-201ENST00000608148 251 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AL354976.1-201ENST00000613843 387 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
HOXA3O43365 AL157770.1-201ENST00000623049 439 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AC005753.1-201ENST00000623837 618 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AC092159.4-201ENST00000624944 550 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXA3O43365 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXA3O43365 AC009220.2-201ENST00000489759 1751 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 LGI1-211ENST00000630047 1751 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXA3O43365 OR2A3P-202ENST00000641249 1776 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
HOXA3O43365 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 RBPJP6-201ENST00000411556 1431 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AL049737.1-201ENST00000413920 1403 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 AL137058.3-201ENST00000624531 3099 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 AC017007.4-201ENST00000503353 1352 ntBASIC5.79□□□□□ -1.48
HOXA3O43365 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
HOXA3O43365 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXA3O43365 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXA3O43365 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXA3O43365 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
HOXA3O43365 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXA3O43365 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
HOXA3O43365 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HOXA3O43365 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 AC245505.2-201ENST00000553572 3055 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AL136981.1-203ENST00000451452 3844 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
HOXA3O43365 ZNF542P-204ENST00000482727 1305 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AC104446.1-201ENST00000613728 1321 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 UBXN8-201ENST00000265616 1450 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXA3O43365 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXA3O43365 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
HOXA3O43365 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXA3O43365 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
HOXA3O43365 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
HOXA3O43365 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXA3O43365 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 SPATA31C1-201ENST00000420021 3895 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HOXA3O43365 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HOXA3O43365 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXA3O43365 RN7SKP55-201ENST00000364888 307 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 AL034417.1-201ENST00000399343 800 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC5.78□□□□□ -1.48
HOXA3O43365 AC246680.2-201ENST00000422106 389 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXA3O43365 TNPO1P1-201ENST00000423641 1138 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC5.78□□□□□ -1.48
HOXA3O43365 RPS3AP44-201ENST00000425466 790 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXA3O43365 AL035458.1-201ENST00000433096 585 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 COX7BP2-201ENST00000437976 242 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 Z84478.1-201ENST00000438230 1219 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXA3O43365 AL592437.1-201ENST00000443781 492 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 CCNJP1-201ENST00000450600 1149 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AC233982.1-201ENST00000451247 436 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXA3O43365 OSTCP1-201ENST00000455507 450 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXA3O43365 VN1R6P-201ENST00000458417 907 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.78□□□□□ -1.48
HOXA3O43365 RN7SL870P-201ENST00000460111 296 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 RPS20P4-201ENST00000461659 355 ntBASIC5.78□□□□□ -1.48
HOXA3O43365 AC069528.1-202ENST00000482888 637 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms