Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 RN7SKP250-201ENST00000363924 321 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AL355143.1-201ENST00000407101 841 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AL139184.1-202ENST00000422303 222 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 MAPRE1P3-201ENST00000435438 796 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 ARMC4P1-201ENST00000438905 707 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 RPL23AP64-201ENST00000469465 435 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 RPL12P24-201ENST00000474907 486 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC002456.2-201ENST00000509356 380 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 ASNSP4-201ENST00000511103 447 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC010374.2-201ENST00000512933 535 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 SNORA74.1-201ENST00000516320 180 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC084337.1-201ENST00000524809 686 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC040174.2-201ENST00000602701 465 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AL359704.2-201ENST00000604335 521 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC018754.1-201ENST00000607486 925 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC062022.1-201ENST00000451026 1684 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 CASC19-228ENST00000641414 1684 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC105114.1-201ENST00000624795 1862 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 RPL31P11-201ENST00000426558 1558 ntBASIC6.57□□□□□ -1.36
DKK3Q9UBP4 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
DKK3Q9UBP4 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 OR2M1P-201ENST00000318104 951 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AL607077.1-201ENST00000401718 499 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 PRELID1P1-201ENST00000403549 660 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AL589655.1-201ENST00000405398 482 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 THEM7P-201ENST00000419556 672 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AC007064.3-201ENST00000422608 359 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AL389925.1-201ENST00000432257 728 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AC003989.1-201ENST00000434569 565 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AL356390.1-201ENST00000455684 397 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AC005017.1-201ENST00000482002 490 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AC108729.1-201ENST00000487812 947 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AC138409.2-202ENST00000507274 458 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AC093815.1-201ENST00000508637 280 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 TPT1P8-201ENST00000510120 555 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AL133399.1-201ENST00000527476 298 ntBASIC6.56□□□□□ -1.36
DKK3Q9UBP4 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC6.56□□□□□ -1.36
DKK3Q9UBP4 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms