Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AC068522.1-201ENST00000482895 345 ntBASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 ASB8-215ENST00000540782 659 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AC005840.5-201ENST00000619166 599 ntBASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AC022919.1-201ENST00000624979 626 ntBASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 GUCY1B2-204ENST00000531898 1979 ntBASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AC245096.1-201ENST00000413104 546 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC005033.1-201ENST00000428904 813 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 HMGB3P24-201ENST00000433260 622 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 FTH1P2-201ENST00000466086 412 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC110056.1-201ENST00000525759 911 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 uc_338.26-201ENST00000612659 160 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 MIR6810-201ENST00000622701 70 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 RNA5SP478-201ENST00000364657 115 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 RNU11-6P-201ENST00000391127 133 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 RBMY2KP-201ENST00000418221 992 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC093166.4-201ENST00000457867 318 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 RN7SL72P-201ENST00000460697 269 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 RN7SL269P-201ENST00000467795 305 ntBASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
CCDC88AQ3V6T2 FBXL21-201ENST00000297158 1305 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AL596448.1-201ENST00000415024 392 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AC005532.2-201ENST00000467154 373 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 RN7SL547P-201ENST00000490793 290 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 WBP1LP3-201ENST00000523033 208 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 CYCSP1-201ENST00000604815 315 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AC087783.2-201ENST00000605070 562 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AL359513.1-201ENST00000614364 557 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 BRD7P6-201ENST00000431406 1860 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 PABPC1P8-201ENST00000452851 2086 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 AC096921.2-201ENST00000561507 1916 ntBASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
CCDC88AQ3V6T2 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 FAM32BP-201ENST00000344033 333 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AL645927.1-201ENST00000396783 406 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 UBE2V1P14-201ENST00000415815 558 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC092017.2-201ENST00000427600 362 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 RN7SL172P-201ENST00000460535 303 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC010343.2-201ENST00000510162 224 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 AC005244.1-201ENST00000582566 339 ntBASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
CCDC88AQ3V6T2 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms