Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SNORA43.1-201ENST00000364863 140 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 RN7SKP186-201ENST00000365371 303 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 RNA5SP279-201ENST00000365513 117 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 AP003170.5-201ENST00000397185 335 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 MIR1275-201ENST00000408770 80 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 GAPDHP23-201ENST00000444823 993 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC010240.2-201ENST00000445363 1205 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC068491.1-201ENST00000449539 1241 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 HMGB1P7-201ENST00000450921 612 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 RPS27AP3-201ENST00000453803 454 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC103563.5-201ENST00000455643 364 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 RN7SL221P-201ENST00000466190 281 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 HSD3BP3-201ENST00000514706 994 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 RN7SKP248-201ENST00000516278 305 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 OR6M2P-201ENST00000529831 871 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC024405.1-201ENST00000532521 1042 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 NPIPB1P-202ENST00000588786 828 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 AL021368.3-201ENST00000607119 578 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 AC004836.1-201ENST00000623032 634 ntBASIC6.16□□□□□ -1.42
VPS35Q96QK1 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS35Q96QK1 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS35Q96QK1 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS35Q96QK1 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
VPS35Q96QK1 RN7SKP237-201ENST00000364663 301 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 SNORA70H-201ENST00000383910 135 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 SNORA70J-201ENST00000384182 135 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS35Q96QK1 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 MAST4-IT1-201ENST00000514241 658 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 RNA5SP434-201ENST00000516647 121 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 Y_RNA.710-201ENST00000516975 110 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AC026826.3-201ENST00000561747 158 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL583832.1-201ENST00000603227 784 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 MIR7109-201ENST00000613748 65 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AC010809.3-201ENST00000621310 641 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL683826.1-201ENST00000624104 627 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 AC073488.6-201ENST00000632293 754 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS35Q96QK1 AC011416.1-201ENST00000514947 1732 ntBASIC6.15□□□□□ -1.42
VPS35Q96QK1 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.43
VPS35Q96QK1 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
VPS35Q96QK1 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
VPS35Q96QK1 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.15□□□□□ -1.43
VPS35Q96QK1 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
VPS35Q96QK1 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
VPS35Q96QK1 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
VPS35Q96QK1 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
VPS35Q96QK1 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.43
VPS35Q96QK1 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
VPS35Q96QK1 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
VPS35Q96QK1 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AL359091.1-201ENST00000449048 1734 ntBASIC6.14□□□□□ -1.43
VPS35Q96QK1 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS35Q96QK1 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
VPS35Q96QK1 AC006511.3-201ENST00000624929 1783 ntBASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms