Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 AC019084.1-201ENST00000457337 432 ntBASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 AC004890.1-201ENST00000461005 181 ntBASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 RN7SL352P-201ENST00000466002 277 ntBASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 NACAP5-201ENST00000509863 636 ntBASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 TOMM22P4-201ENST00000511318 336 ntBASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 AC026956.1-201ENST00000558741 396 ntBASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 AL136984.1-201ENST00000607611 1893 ntBASIC6.73□□□□□ -1.33
CCDC112Q8NEF3 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AP005435.3-201ENST00000531260 3198 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 RNA5SP382-201ENST00000363355 112 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 SNORD35A-201ENST00000363389 86 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC121334.1-201ENST00000396414 802 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 RPL18AP14-201ENST00000417685 526 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 FAM183DP-201ENST00000421987 399 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AL596268.1-201ENST00000427910 1048 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 GAPDHP19-201ENST00000431768 1005 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 NPM1P23-201ENST00000440193 849 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 RPL12P49-201ENST00000441100 121 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 NREP-217ENST00000509025 987 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC023968.1-201ENST00000560719 475 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC092718.4-201ENST00000566639 716 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 RPL7AP69-201ENST00000595306 806 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC073046.2-201ENST00000604756 527 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 MIR6885-201ENST00000612241 66 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC112Q8NEF3 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
CCDC112Q8NEF3 AL031123.3-201ENST00000623345 1837 ntBASIC6.71□□□□□ -1.33
CCDC112Q8NEF3 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.71□□□□□ -1.33
CCDC112Q8NEF3 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
CCDC112Q8NEF3 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.71□□□□□ -1.33
CCDC112Q8NEF3 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 SMG1P5-202ENST00000529428 4219 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 SMG1P2-201ENST00000566127 4221 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AC020656.2-201ENST00000613291 5309 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AC130360.2-201ENST00000533477 1556 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 RN7SKP191-201ENST00000364713 306 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 SNORA43.1-201ENST00000364863 140 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 RN7SKP186-201ENST00000365371 303 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 SNORA77.2-201ENST00000408571 112 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AL158827.1-201ENST00000416300 391 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AC083862.1-201ENST00000427378 1242 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AC092106.2-201ENST00000436597 487 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 OR8Q1P-201ENST00000526467 655 ntBASIC6.71□□□□□ -1.34
CCDC112Q8NEF3 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms