Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
COL28A1Q2UY09 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 RNA5SP65-201ENST00000363166 119 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 SUGT1P2-201ENST00000379452 992 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 CYCSP17-201ENST00000407870 315 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 CXCR2P1-202ENST00000443392 1074 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AL451063.1-201ENST00000450164 1133 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC023141.9-201ENST00000458734 412 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 SEPT7P6-201ENST00000469999 1143 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 OR52A4P-202ENST00000481634 799 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 RN7SL382P-201ENST00000482631 282 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 OR2A3P-201ENST00000493774 953 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 RNA5SP271-201ENST00000516700 88 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 IGLV2-28-201ENST00000520681 304 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AP003080.1-202ENST00000526526 915 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AP005639.1-201ENST00000526939 192 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 LINC00556-201ENST00000569603 412 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 CTSLP2-201ENST00000580501 394 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC015818.6-201ENST00000584274 634 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC020916.2-201ENST00000591242 360 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC107993.1-201ENST00000591343 684 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 MIR6748-201ENST00000610433 71 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC004477.3-201ENST00000614061 590 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 MIR6811-201ENST00000620409 58 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC104820.1-201ENST00000624183 307 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AL662795.2-201ENST00000624252 3706 ntBASIC6.23□□□□□ -1.41
COL28A1Q2UY09 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL28A1Q2UY09 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 HSPD1P9-201ENST00000420325 1636 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AL589826.1-201ENST00000340697 249 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 RNA5SP333-201ENST00000363466 118 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 RNA5SP334-201ENST00000364825 118 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 RNU6-891P-201ENST00000384280 111 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AL353626.3-201ENST00000413399 657 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 MTND4LP21-201ENST00000415303 295 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AL513325.1-201ENST00000417716 1034 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms