Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.56□□□□□ -1.2
MRE11P49959 AL713998.2-201ENST00000604538 1198 ntBASIC7.56□□□□□ -1.2
MRE11P49959 AC113361.1-201ENST00000606683 543 ntBASIC7.56□□□□□ -1.2
MRE11P49959 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC7.56□□□□□ -1.2
MRE11P49959 AC016597.2-201ENST00000613256 341 ntBASIC7.56□□□□□ -1.2
MRE11P49959 AC097641.3-201ENST00000613523 464 ntBASIC7.56□□□□□ -1.2
MRE11P49959 Six3os1_1.1-201ENST00000620900 87 ntBASIC7.56□□□□□ -1.2
MRE11P49959 AC005753.1-201ENST00000623837 618 ntBASIC7.56□□□□□ -1.2
MRE11P49959 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC7.56□□□□□ -1.2
MRE11P49959 AL359976.1-201ENST00000418655 3528 ntBASIC7.56□□□□□ -1.2
MRE11P49959 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
MRE11P49959 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.2
MRE11P49959 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.2
MRE11P49959 MIPEPP2-201ENST00000422560 1819 ntBASIC7.56□□□□□ -1.2
MRE11P49959 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC7.56□□□□□ -1.2
MRE11P49959 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
MRE11P49959 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC7.56□□□□□ -1.2
MRE11P49959 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC7.56□□□□□ -1.2
MRE11P49959 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC7.56□□□□□ -1.2
MRE11P49959 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
MRE11P49959 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
MRE11P49959 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC7.56□□□□□ -1.2
MRE11P49959 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MRE11P49959 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
MRE11P49959 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC7.55□□□□□ -1.2
MRE11P49959 IFIT1P1-201ENST00000400497 1449 ntBASIC7.55□□□□□ -1.2
MRE11P49959 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
MRE11P49959 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MRE11P49959 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
MRE11P49959 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
MRE11P49959 MTHFD2P5-201ENST00000320415 844 ntBASIC7.55□□□□□ -1.2
MRE11P49959 MIR620-201ENST00000385232 95 ntBASIC7.55□□□□□ -1.2
MRE11P49959 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
MRE11P49959 IL20-203ENST00000391930 1153 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MRE11P49959 AL121835.1-201ENST00000404250 354 ntBASIC7.55□□□□□ -1.2
MRE11P49959 MTATP6P31-201ENST00000406985 692 ntBASIC7.55□□□□□ -1.2
MRE11P49959 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC7.55□□□□□ -1.2
MRE11P49959 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC7.55□□□□□ -1.2
MRE11P49959 OR51A6P-201ENST00000418680 1004 ntBASIC7.55□□□□□ -1.2
MRE11P49959 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC7.55□□□□□ -1.2
MRE11P49959 BX119904.3-201ENST00000428194 957 ntBASIC7.55□□□□□ -1.2
MRE11P49959 PSMD10P2-201ENST00000432890 672 ntBASIC7.55□□□□□ -1.2
MRE11P49959 AL390879.1-201ENST00000439143 386 ntBASIC7.55□□□□□ -1.2
MRE11P49959 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC7.55□□□□□ -1.2
MRE11P49959 AC098826.2-201ENST00000452011 651 ntBASIC7.55□□□□□ -1.2
MRE11P49959 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC7.55□□□□□ -1.2
MRE11P49959 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC7.55□□□□□ -1.2
MRE11P49959 RPL7P51-201ENST00000490532 749 ntBASIC7.55□□□□□ -1.2
MRE11P49959 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MRE11P49959 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC7.55□□□□□ -1.2
MRE11P49959 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
MRE11P49959 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC7.55□□□□□ -1.2
MRE11P49959 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC7.55□□□□□ -1.2
MRE11P49959 AC026826.3-201ENST00000561747 158 ntBASIC7.55□□□□□ -1.2
MRE11P49959 AC245884.10-201ENST00000597355 337 ntBASIC7.55□□□□□ -1.2
MRE11P49959 BNIP3P19-201ENST00000605397 577 ntBASIC7.55□□□□□ -1.2
MRE11P49959 AC112503.2-201ENST00000609005 552 ntBASIC7.55□□□□□ -1.2
MRE11P49959 AL356490.1-201ENST00000623079 479 ntBASIC7.55□□□□□ -1.2
MRE11P49959 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC7.55□□□□□ -1.2
MRE11P49959 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC7.55□□□□□ -1.2
MRE11P49959 AL592494.2-201ENST00000425455 1548 ntBASIC7.55□□□□□ -1.2
MRE11P49959 SHQ1P1-201ENST00000437111 1544 ntBASIC7.55□□□□□ -1.2
MRE11P49959 FTO-203ENST00000460382 1517 ntTSL 5 BASIC7.55□□□□□ -1.2
MRE11P49959 AL449283.1-201ENST00000602631 3403 ntBASIC7.55□□□□□ -1.2
MRE11P49959 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
MRE11P49959 MFSD8-256ENST00000641949 1640 ntBASIC7.55□□□□□ -1.2
MRE11P49959 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
MRE11P49959 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
MRE11P49959 AC105235.1-201ENST00000623208 1816 ntBASIC7.55□□□□□ -1.2
MRE11P49959 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 AC233968.1-201ENST00000611212 1300 ntBASIC7.54□□□□□ -1.2
MRE11P49959 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 MTCO1P11-201ENST00000429111 1528 ntBASIC7.54□□□□□ -1.2
MRE11P49959 AP002800.1-201ENST00000624982 2225 ntBASIC7.54□□□□□ -1.2
MRE11P49959 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 IFNA16-201ENST00000380216 939 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
MRE11P49959 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC7.54□□□□□ -1.2
MRE11P49959 AC092651.1-201ENST00000426110 312 ntBASIC7.54□□□□□ -1.2
MRE11P49959 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 RPS29P14-201ENST00000431518 171 ntBASIC7.54□□□□□ -1.2
MRE11P49959 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC7.54□□□□□ -1.2
MRE11P49959 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC7.54□□□□□ -1.2
MRE11P49959 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC7.54□□□□□ -1.2
MRE11P49959 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC7.54□□□□□ -1.2
MRE11P49959 AC094085.1-201ENST00000468914 584 ntBASIC7.54□□□□□ -1.2
MRE11P49959 CR383656.1-201ENST00000484916 377 ntBASIC7.54□□□□□ -1.2
MRE11P49959 RN7SL306P-201ENST00000492941 296 ntBASIC7.54□□□□□ -1.2
MRE11P49959 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 AC093816.1-201ENST00000515076 913 ntBASIC7.54□□□□□ -1.2
MRE11P49959 SCARNA18.2-201ENST00000516882 84 ntBASIC7.54□□□□□ -1.2
MRE11P49959 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 NATP-201ENST00000523491 878 ntBASIC7.54□□□□□ -1.2
MRE11P49959 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
MRE11P49959 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.54□□□□□ -1.2
MRE11P49959 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms