Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC012065.3-201ENST00000602736 439 ntBASIC7.47□□□□□ -1.21
LIG3P49916 AC024589.2-201ENST00000605642 1294 ntBASIC7.47□□□□□ -1.21
LIG3P49916 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.47□□□□□ -1.21
LIG3P49916 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
LIG3P49916 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 AC069222.1-201ENST00000608028 3360 ntBASIC7.47□□□□□ -1.21
LIG3P49916 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC7.47□□□□□ -1.21
LIG3P49916 Z83820.1-201ENST00000456978 1499 ntBASIC7.47□□□□□ -1.21
LIG3P49916 BX005019.1-201ENST00000561881 1810 ntBASIC7.47□□□□□ -1.21
LIG3P49916 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
LIG3P49916 ZNF736P9Y-201ENST00000439586 1345 ntBASIC7.47□□□□□ -1.21
LIG3P49916 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
LIG3P49916 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 EPYC-201ENST00000261172 1539 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 AL157713.1-201ENST00000379752 1531 ntBASIC7.47□□□□□ -1.21
LIG3P49916 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
LIG3P49916 NEPNP-201ENST00000404786 1371 ntBASIC7.46□□□□□ -1.21
LIG3P49916 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
LIG3P49916 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
LIG3P49916 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
LIG3P49916 AC132219.2-201ENST00000624416 2327 ntBASIC7.46□□□□□ -1.21
LIG3P49916 AL591848.4-201ENST00000567832 3472 ntBASIC7.46□□□□□ -1.21
LIG3P49916 AC062029.1-202ENST00000606164 3651 ntBASIC7.46□□□□□ -1.21
LIG3P49916 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.46□□□□□ -1.21
LIG3P49916 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
LIG3P49916 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC7.46□□□□□ -1.21
LIG3P49916 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
LIG3P49916 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIG3P49916 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC7.46□□□□□ -1.22
LIG3P49916 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIG3P49916 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
LIG3P49916 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIG3P49916 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC7.46□□□□□ -1.22
LIG3P49916 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 TIMM9P2-201ENST00000419324 266 ntBASIC7.46□□□□□ -1.22
LIG3P49916 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIG3P49916 OR6R1P-201ENST00000431838 940 ntBASIC7.46□□□□□ -1.22
LIG3P49916 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 PHB2P1-201ENST00000434943 890 ntBASIC7.46□□□□□ -1.22
LIG3P49916 UBE2D3P4-201ENST00000441973 436 ntBASIC7.46□□□□□ -1.22
LIG3P49916 LIN28AP2-201ENST00000445283 458 ntBASIC7.46□□□□□ -1.22
LIG3P49916 CASP3P1-201ENST00000446037 609 ntBASIC7.46□□□□□ -1.22
LIG3P49916 ZNF736P5Y-201ENST00000451173 805 ntBASIC7.46□□□□□ -1.22
LIG3P49916 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.46□□□□□ -1.22
LIG3P49916 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 RN7SL791P-201ENST00000467868 295 ntBASIC7.46□□□□□ -1.22
LIG3P49916 AC008620.1-201ENST00000468453 592 ntBASIC7.46□□□□□ -1.22
LIG3P49916 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 XKRY-201ENST00000510392 1100 ntBASIC7.46□□□□□ -1.22
LIG3P49916 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
LIG3P49916 NAT2-202ENST00000520116 716 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 AP003461.1-201ENST00000528866 78 ntBASIC7.46□□□□□ -1.22
LIG3P49916 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC7.46□□□□□ -1.22
LIG3P49916 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC7.46□□□□□ -1.22
LIG3P49916 AC023161.2-201ENST00000551218 780 ntBASIC7.46□□□□□ -1.22
LIG3P49916 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC7.46□□□□□ -1.22
LIG3P49916 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC7.46□□□□□ -1.22
LIG3P49916 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC7.46□□□□□ -1.22
LIG3P49916 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC7.46□□□□□ -1.22
LIG3P49916 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC7.46□□□□□ -1.22
LIG3P49916 AC007785.3-202ENST00000601033 518 ntTSL 3 BASIC7.46□□□□□ -1.22
LIG3P49916 AL031429.2-201ENST00000602605 649 ntBASIC7.46□□□□□ -1.22
LIG3P49916 MTCO2P22-201ENST00000603246 681 ntBASIC7.46□□□□□ -1.22
LIG3P49916 AL353600.1-201ENST00000608148 251 ntBASIC7.46□□□□□ -1.22
LIG3P49916 U91328.4-201ENST00000608919 517 ntBASIC7.46□□□□□ -1.22
LIG3P49916 AC073530.2-201ENST00000623987 261 ntBASIC7.46□□□□□ -1.22
LIG3P49916 OR1S1-201ENST00000624470 978 ntBASIC7.46□□□□□ -1.22
LIG3P49916 AC092184.1-201ENST00000625042 715 ntBASIC7.46□□□□□ -1.22
LIG3P49916 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
LIG3P49916 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC7.46□□□□□ -1.22
LIG3P49916 AC233280.20-201ENST00000637412 416 ntBASIC7.46□□□□□ -1.22
LIG3P49916 NXF4-202ENST00000416098 1465 ntBASIC7.46□□□□□ -1.22
LIG3P49916 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC7.46□□□□□ -1.22
LIG3P49916 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC7.46□□□□□ -1.22
LIG3P49916 AC007114.2-201ENST00000576014 4281 ntBASIC7.46□□□□□ -1.22
LIG3P49916 EEF1A1P22-201ENST00000559385 1380 ntBASIC7.46□□□□□ -1.22
LIG3P49916 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC7.45□□□□□ -1.22
LIG3P49916 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC7.45□□□□□ -1.22
LIG3P49916 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC7.45□□□□□ -1.22
LIG3P49916 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
LIG3P49916 ZNF101P1-201ENST00000435701 1720 ntBASIC7.45□□□□□ -1.22
LIG3P49916 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG3P49916 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC7.45□□□□□ -1.22
LIG3P49916 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
LIG3P49916 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms