Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AK6-203ENST00000502819 743 ntTSL 5 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 CC2D2A-207ENST00000507954 548 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC118282.2-201ENST00000508739 374 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 SNORD116-30-201ENST00000516468 85 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 MTCYBP41-201ENST00000528913 1123 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC026458.1-201ENST00000564330 438 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC009119.1-202ENST00000567342 543 ntTSL 4 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC068135.2-201ENST00000569293 1028 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AP006587.6-201ENST00000582128 1091 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AL035417.2-201ENST00000603887 796 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AL355802.4-201ENST00000607635 548 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC109347.2-201ENST00000610220 349 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AL139407.1-201ENST00000613826 1175 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 RN7SL126P-201ENST00000616400 299 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AC116165.2-201ENST00000616705 206 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AL161420.1-201ENST00000619393 264 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 CDY19P-201ENST00000411668 1613 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 CDY18P-201ENST00000438294 1609 ntBASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
CCDC39Q9UFE4 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC104446.1-201ENST00000613728 1321 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 SNORD116-9-201ENST00000384000 95 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 SNORD116-3-201ENST00000384287 95 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 SNORD116-7-201ENST00000384404 95 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 SNORD116-5-201ENST00000384462 95 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RNU6-1320P-201ENST00000390838 107 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RNU6-1269P-201ENST00000391139 107 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RNA5SP53-201ENST00000391299 120 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AL359715.1-201ENST00000404330 555 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 MYB-206ENST00000420123 1051 ntTSL 5 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 MTCO1P57-201ENST00000432182 261 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 NAP1L4P3-201ENST00000432820 1147 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC019185.3-201ENST00000438805 323 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 MTATP6P23-201ENST00000440153 476 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 H3F3BP1-201ENST00000440551 403 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC010878.1-201ENST00000456500 1047 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RNU6-599P-201ENST00000459383 107 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RNU6-1193P-201ENST00000459461 107 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RPSAP48-201ENST00000466509 889 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 CADM2-AS2-201ENST00000467225 768 ntTSL 5 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AP000805.1-201ENST00000471604 784 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RNU6ATAC39P-201ENST00000516309 149 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 IGLVV-66-201ENST00000523818 341 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 KCTD9P4-201ENST00000526766 1166 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC092032.1-201ENST00000603090 165 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC011451.2-201ENST00000604303 598 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC092960.1-201ENST00000604762 351 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC012510.1-201ENST00000607946 759 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AL161931.1-201ENST00000612768 246 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 U6.42-201ENST00000618440 107 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AL121890.3-201ENST00000618494 516 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AL158163.2-201ENST00000619110 700 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RNU6-368P-201ENST00000620928 107 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 RNU6-538P-201ENST00000622329 107 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC068880.4-201ENST00000623082 495 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC120057.5-201ENST00000623840 154 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC7.84□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms